This code is associated with the paper from White et al., "A high-resolution mRNA expression time course of embryonic development in zebrafish". eLife, 2017. http://dx.doi.org/10.7554/eLife.30860
Notes to recreate the analysis in White et al. 2017
- GO-biolayout.md Notes on running topGO on the gene clusters created using BioLayout Express
- zfs-plots.Rmd Rmarkdown file to reproduce the plots in the paper
The zfs-plots Rmarkdown file expects two data files which do not exist in the repository for reasons of size. To run the code you will need to first download the files below