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Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
Hepatitis C transmission model using Michigan HCV surveillance data (in prep).
Code for the Ebola spatial modeling project.
Identifiability, active subspaces, and parameter reduction using the sensitivity FIM
Class Materials for Epid 814
dengue transmission model project
BWF PUP iTIMS Workshop - exercise notebook files
Code for cholera model comparison and distinguishability project.