EpiMath

Repositories

• BAIT_software

  Biofilm Architecture Inference Tool
  MIT 0 1 0 0 Updated Sep 17, 2020

• epid-814-materials

  Class Materials for Epid 814
  HTML 2 3 0 0 Updated Nov 29, 2019

• cm-dag

  Code for the compartmental model/DAG project.
  R MIT 0 1 0 0 Updated Oct 7, 2019

• Hepatitis-C-in-Young-PWID

  Code for: Gicquelais RE, Foxman B, Coyle J, Eisenberg MC. (2019). Hepatitis C transmission in young people who inject drugs: insights using a dynamic model informed by state public health surveillance. Epidemics. https://doi.org/10.1016/j.epidem.2019.02.003
  R MIT 0 1 0 0 Updated Mar 21, 2019

• joint-genital-sero-HPV-model

  Code for "Integrating measures of viral prevalence and seroprevalence: a mechanistic modeling approach to explaining cohort patterns of HPV in women in the U.S." (Brouwer, Meza, Eisenberg, 2019)
  R MIT 0 1 0 0 Updated Feb 10, 2019

• param-estimation-SIR

  Forked from marisae/param-estimation-SIR

  Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
  R MIT 10 18 0 0 Updated Feb 10, 2019

• gravity-model-ebola

  Code for the Ebola spatial modeling project.
  MATLAB 0 2 0 0 Updated May 3, 2018

• sFIM-param-reduction

  Identifiability, active subspaces, and parameter reduction using the sensitivity FIM
  R 0 2 0 0 Updated Feb 28, 2018

• dengue_model

  dengue transmission model project
  Python 1 2 0 0 Updated Aug 12, 2017

• bwf-pup-itims-2017

  BWF PUP iTIMS Workshop - exercise notebook files
  HTML MIT 1 1 0 0 Updated Aug 11, 2017

• cholera-distinguishability

  Code for cholera model comparison and distinguishability project.
  MATLAB MIT 0 2 0 0 Updated Jun 22, 2017