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Memory error in grover embedding #20

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marcostorrework opened this issue Feb 2, 2023 · 0 comments
Open

Memory error in grover embedding #20

marcostorrework opened this issue Feb 2, 2023 · 0 comments

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@marcostorrework
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Describe the bug
ZairaChem fails when trying to fit a model with an input file of 37637 rows.
It fails because of running out of memory when calculating the Grover Embedding (model eos7w6n).
This happens on a laptop with 16 GB RAM.

To Reproduce
Steps to reproduce the behavior:

  1. Use a computer with 16 GB RAM
  2. Download the attached example file "train.csv"
  3. Create an empty directory "model"
  4. conda activate zairachem
  5. zairachem fit -i train.csv -m model

Expected behavior
ZairaChem is supposed to fit a model and end without errors

Screenshots
Log with error attached

Desktop (please complete the following information):

  • OS: Ubuntu 20.04.5 LTS (running under Windows WLS)
  • Using ZairaChem version 0.0.1, installed in December 2022

Additional context
Running on a laptop with 16 GB RAM

Log with error:
fit_20221220_0431.log
Example input file to reproduce:
train.csv

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