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This appeared while performing "java -Xmx6g -jar ~/exomiser-cli-13.3.0/exomiser-cli-13.3.0.jar --analysis examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml --spring.config.location=/data/chuhy/exomiser-cli-13.3.0/application.properties --assembly hg38" The application.properties is as follows
#exomiser.data-directory=data
exomiser.data-directory=/data/chuhy/exomiser-cli-13.3.0/data
exomiser.hg19.data-version=2309
exomiser.hg38.data-version=2309
exomiser.hg19.variant-white-list-path=2309_hg19_clinvar_whitelist.tsv.gz
exomiser.hg38.variant-white-list-path=2309_hg38_clinvar_whitelist.tsv.gz
exomiser.phenotype.data-version=2309
exomiser.hg38.remm-path=ReMM.v0.4.hg38.tsv.gz
The text was updated successfully, but these errors were encountered:
I think you should put the full path of the remm in the application properties, for example mnt/f/exomiser/exomiser-cli-13.3.0/data/2309_hg38/remm........
This appeared while performing "java -Xmx6g -jar ~/exomiser-cli-13.3.0/exomiser-cli-13.3.0.jar --analysis examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml --spring.config.location=/data/chuhy/exomiser-cli-13.3.0/application.properties --assembly hg38"
The application.properties is as follows
#exomiser.data-directory=data
exomiser.data-directory=/data/chuhy/exomiser-cli-13.3.0/data
exomiser.hg19.data-version=2309
exomiser.hg38.data-version=2309
exomiser.hg19.variant-white-list-path=2309_hg19_clinvar_whitelist.tsv.gz
exomiser.hg38.variant-white-list-path=2309_hg38_clinvar_whitelist.tsv.gz
exomiser.phenotype.data-version=2309
exomiser.hg38.remm-path=ReMM.v0.4.hg38.tsv.gz
The text was updated successfully, but these errors were encountered: