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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(AddPCA,SRTProject)
S3method(AddTSNE,SRTProject)
S3method(AddUMAP,SRTProject)
S3method(CCHeatMap,SRTProject)
S3method(EachClusterSpaHeatMap,SRTProject)
S3method(EachEmbedPlot,SpatialExperiment)
S3method(EachExprSpaHeatMap,SRTProject)
S3method(EachGCHeatMap,SRTProject)
S3method(EachGCHeatMap,SpatialExperiment)
S3method(EachRGBSpaHeatMap,SRTProject)
S3method(EmbedPlot,SRTProject)
S3method(EmbedPlot,SpatialExperiment)
S3method(GCHeatMap,SpatialExperiment)
export(AddAdj)
export(AddClusters2MetaData)
export(AddPCA)
export(AddTSNE)
export(AddTrajectory)
export(AddUMAP)
export(Annotation_SpatialAnno)
export(CCHeatMap)
export(Cluster_DRSC)
export(Cluster_Louvain)
export(Cluster_SCMEB)
export(CreateSRTProject)
export(EachClusterSpaHeatMap)
export(EachEmbedPlot)
export(EachExprSpaHeatMap)
export(EachGCHeatMap)
export(EachRGBSpaHeatMap)
export(EmbedPlot)
export(FindAllDEGs)
export(FindDEGs)
export(GCHeatMap)
export(Integrate_PRECAST)
export(Integrate_iSCMEB)
export(RCTD_run)
export(RCTD_structure)
export(TrajectEmbedPlot)
export(addProjectSummary)
export(barPlot_enrich)
export(chooseColors)
export(cluster_metric)
export(drawFigs)
export(filter_gene)
export(filter_spot)
export(getGeneSpotData)
export(getIntegratedData)
export(getSRTVerbose)
export(getSRToutputPrefix)
export(get_top_pathway)
export(mat2list)
export(matlist2mat)
export(model_set_DRSC)
export(model_set_Louvain)
export(model_set_PRECAST)
export(model_set_SCMEB)
export(model_set_SpatialAnno)
export(model_set_iSCMEB)
export(normalizeSRT)
export(sce2seurat)
export(selectVariableFeatures)
export(setSRToutputPrefix)
export(setSRTverbose)
export(seu2seuList)
export(spe2seurat)
export(spe2seuratList)
export(topVGs)
export(transferGeneNames)
export(vec2list)
export(write_fig)
exportClasses(SRTProject)
importFrom(DR.SC,DR.SC_fit)
importFrom(DR.SC,selectModel)
importFrom(PRECAST,ICM.EM_structure)
importFrom(PRECAST,SelectModel)
importFrom(SC.MEB,SC.MEB)
importFrom(SC.MEB,selectK)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindMarkers)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,NormalizeData)
importFrom(SpatialAnno,icmem)
importFrom(colorspace,adjust_transparency)
importFrom(dplyr,`%>%`)
importFrom(ggpubr,ggarrange)
importFrom(iSC.MEB,fit.iscmeb)
importFrom(scater,calculateUMAP)
importFrom(slingshot,slingPseudotime)
importFrom(slingshot,slingshot)