The MATLAB toolbox for MEG, EEG and iEEG analysis
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@config ENH+OCTAVE: for .c files that contain both "include <mex.h>" and "inc… Feb 12, 2017
bin FIX - some small issues with synchronization of private functions Sep 29, 2018
compat FIX bug3464 - do not mix warning and ft_warning, return the warning Nov 1, 2018
connectivity automatically synchronized identical files to dd64bf1 Nov 1, 2018
contrib DOCU - updated docu as per bug 3465 (#867) Nov 5, 2018
engine automatically synchronized identical files to 29cada7 Aug 26, 2018
external Intersect plane (#852) Oct 22, 2018
fileio support writing to other audio file formats Nov 7, 2018
forward automatically synchronized identical files to dd64bf1 Nov 1, 2018
inverse automatically synchronized identical files to dd64bf1 Nov 1, 2018
peer automatically synchronized identical files to 29cada7 Aug 26, 2018
plotting automatically synchronized identical files to dd64bf1 Nov 1, 2018
preproc automatically synchronized identical files to dd64bf1 Nov 1, 2018
private FIX - wcm correction failed with nonparametric_individual clusterthre… Nov 14, 2018
qsub automatically synchronized identical files to 29cada7 Aug 26, 2018
realtime reverted the recent changes regarding buffer source code reorganizati… Nov 12, 2018
specest automatically synchronized identical files to dd64bf1 Nov 1, 2018
src DOC - updated old fcdonders URL May 18, 2018
statfun renamed test script (since it is not invalid any more) and made vario… Mar 15, 2018
template ENH - scrubbed confusing hdr-field from template files Aug 23, 2018
test ENH - test function created Nov 14, 2018
trialfun FIX - added ismatch to trialfun/private by running sync script (#796) Sep 7, 2018
utilities Merge pull request #872 from robertoostenveld/seeg-shaft Nov 12, 2018
.gitignore fixed bug in standalone code, included two functions from hcp/megconn… Jun 28, 2018
.travis.yml Merge pull request #310 from nno/_wip/moxunit_fieldtrip_travis Mar 6, 2017
COPYING more cleanups on the svn properties Feb 3, 2011
Contents.m small updates to documentation and help Aug 15, 2017
Makefile BLD: add Makefile for builing .mex* files Feb 13, 2017
README small updates to documentation and help Aug 15, 2017
besa2fieldtrip.m added space directly after , in the code Sep 30, 2017
bis2fieldtrip.m ENH - be more explicit which type of sensor information should be rea… Apr 19, 2017
data2bids.m use sample/type/value instead of event_sample, etc. Convert strings t… Oct 9, 2018
edf2fieldtrip.m automatically synchronized identical files to 898ce79 Feb 19, 2016
fieldtrip2besa.m automatically synchronized identical files to 6d48716 Jul 4, 2017
fieldtrip2bis.m new: bis2fieldtrip elec conversion and vice versa Mar 4, 2017
fieldtrip2ctf.m automatically synchronized identical files to 6d48716 Jul 4, 2017
fieldtrip2fiff.m Updated event coding May 3, 2018
fieldtrip2spss.m doc update Nov 14, 2017
ft_analysispipeline.m added space directly after , in the code Sep 30, 2017
ft_annotate.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_anonimizedata.m moved parsekeyboardevent to private function May 8, 2018
ft_appenddata.m ENH - dewl with optional sampleinfo in ft_appendtimelock just like ft… Sep 21, 2018
ft_appendfreq.m FIX regression error detected in test_bug3267 due to timelock structu… Jan 31, 2018
ft_appendsens.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_appendsource.m some cleanups, nothing functional Oct 23, 2018
ft_appendspike.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_appendtimelock.m ENH - dewl with optional sampleinfo in ft_appendtimelock just like ft… Sep 21, 2018
ft_artifact_clip.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_ecg.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_eog.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_jump.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_muscle.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_nan.m ENH - allow selection of channels Feb 1, 2018
ft_artifact_threshold.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_artifact_tms.m fixed bugs in ft_artifact_ecg, which seems to have been unused for a … Jan 31, 2018
ft_artifact_zvalue.m moved parsekeyboardevent to private function May 8, 2018
ft_audiovideobrowser.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_channelnormalise.m added cfg.scale option to allow scaling to another number, default is… Mar 31, 2018
ft_channelrepair.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_clusterplot.m yet another fix for dealing with the highlighting options Oct 18, 2017
ft_combineplanar.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_componentanalysis.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_conjunctionanalysis.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_connectivityanalysis.m ENH - more robust handling when multiple trials are required Dec 20, 2017
ft_connectivityplot.m Sfactorization3x3 (#536) Oct 4, 2017
ft_connectivitysimulation.m Remove tilde when used to ignore last output Oct 10, 2018
ft_crossfrequencyanalysis.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_databrowser.m fixed a bug in the maxmin absmax specification of vertical scale Nov 8, 2018
ft_defacemesh.m made the rollback more consistent Oct 2, 2018
ft_defacevolume.m improved figure handle, deal with coordsys for bids, ensure coordsys and Aug 27, 2018
ft_defaults.m FIX #813 - improve the detection and feedback of incorrect SPM8 mex f… Sep 21, 2018
ft_definetrial.m import event info for mne -epo.fif (#755) Aug 3, 2018
ft_denoise_dssp.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_denoise_pca.m added space directly after , in the code Sep 30, 2017
ft_denoise_synthetic.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_denoise_tsr.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_detect_movement.m added space directly after , in the code Sep 30, 2017
ft_dipolefitting.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_dipolesimulation.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_electrodeplacement.m ENH - implemented automatic placement of ECoG electrodes based on cor… Nov 10, 2018
ft_electroderealign.m small cleanup of location of functions, moved some from "forward" Oct 18, 2018
ft_electrodermalactivity.m fixed typo Feb 8, 2018
ft_examplefunction.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqanalysis.m added space directly after , in the code Sep 30, 2017
ft_freqanalysis_mvar.m added space directly after , in the code Sep 30, 2017
ft_freqbaseline.m added space directly after , in the code Sep 30, 2017
ft_freqdescriptives.m small updates to documentation and help Aug 15, 2017
ft_freqgrandaverage.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_freqinterpolate.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_freqsimulation.m small updates to documentation and help Aug 15, 2017
ft_freqstatistics.m made the randomseed pre/postamble more consistent Aug 25, 2018
ft_globalmeanfield.m pass showcallinfo recursively to lower-level functions, see http://bu… May 2, 2017
ft_headmovement.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_heartrate.m flip signal to ensure positive skewness, implement both envelopewindo… Jun 27, 2018
ft_interactiverealign.m more consistent handling of keyboard interaction for figures May 8, 2018
ft_interpolatenan.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_lateralizedpotential.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_layoutplot.m FIX - resolved some errors in layout generation, these were detected by Mar 24, 2017
ft_math.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_megplanar.m added ft_determine_units to complement ft_convert_units, for consiste… Aug 21, 2017
ft_megrealign.m small cleanup of location of functions, moved some from "forward" Oct 18, 2018
ft_meshrealign.m removed two unused subfunctions May 8, 2018
ft_movieplotER.m ensure correct use of ft_preamble_provenance Aug 26, 2018
ft_movieplotTFR.m improved the help, no functional changes Sep 30, 2017
ft_multiplotCC.m ENH - use ft_getopt instead of isfield..., see http://bugzilla.fieldt… May 2, 2017
ft_multiplotER.m ENH - autoselect cfg.parameter=individual in case of timelockgrandave… Oct 5, 2017
ft_multiplotTFR.m FIX bug3464 - do not mix warning and ft_warning, return the warning Nov 1, 2018
ft_mvaranalysis.m fix to ft_mvaranalysis, all the other commit messages are 'noise' (#790) Sep 4, 2018
ft_neighbourplot.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_networkanalysis.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_prepare_headmodel.m ENH - use keepfields in the creation of tmpcfg, to pass on potentiall… ( Oct 26, 2018
ft_prepare_layout.m improved support for NIRS channel positions and automatic constructio… May 25, 2018
ft_prepare_leadfield.m some documentation cleanups Aug 15, 2018
ft_prepare_mesh.m FIX #778 - do not confuse the cfg.smooth ft_prepare_mesh with that of… Oct 2, 2018
ft_prepare_montage.m implemented comp and invcomp as montage, i.e. these allow you to conv… Feb 8, 2018
ft_prepare_neighbours.m some small cleanups Oct 26, 2018
ft_prepare_sourcemodel.m ensure correct use of ft_preamble_provenance Aug 26, 2018
ft_preprocessing.m ENH - implemented inverse rejection of artifacts Feb 21, 2018
ft_qualitycheck.m implemented a test script for issue #623, use all channels in case EE… Jan 12, 2018
ft_recodeevent.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_redefinetrial.m Bugfix - fixed the problem described in http://bugzilla.fieldtriptool… Oct 8, 2018
ft_regressconfound.m bugfix(#767) ensuring that ft_regressconfound respects dimord Aug 10, 2018
ft_rejectartifact.m added method=value to replace artifact section with user-specified sc… Mar 31, 2018
ft_rejectcomponent.m fprintf replaced with ft_info in ft_componentanalysis Dec 20, 2017
ft_rejectvisual.m bugfix2673 - ft_selectdata added at the begining to select trials/cha… Nov 6, 2018
ft_removetemplateartifact.m restore the provenance information after ft_selectdata Sep 30, 2017
ft_resampledata.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_respiration.m implement both evelopewindow and peakseparation Jun 27, 2018
ft_scalpcurrentdensity.m Bug 3372 (#585) Nov 21, 2017
ft_singleplotER.m don't apply scaling if min/max are exactly the same Feb 8, 2018
ft_singleplotTFR.m FIX bug3464 - do not mix warning and ft_warning, return the warning Nov 1, 2018
ft_sliceinterp.m small updates to documentation and help Aug 15, 2017
ft_sourceanalysis.m Mikkel reported an issue with a cfg.grid.inside=ones(npos,1), which w… Jun 12, 2018
ft_sourcedescriptives.m moved cancorr from private to fieldtrip/connectivity, cleaned up the … Jan 25, 2018
ft_sourcegrandaverage.m reimplemented the core of ft_sourcegrandaverage, using getdimord and … Oct 23, 2018
ft_sourceinterpolate.m ENH - some small changes to improve nan-handling for on-the-fly inter… Oct 31, 2018
ft_sourcemovie.m moved parsekeyboardevent to private function May 8, 2018
ft_sourceparcellate.m FIX - increase numerical tolerance for comparison of dipole positions… Nov 22, 2017
ft_sourceplot.m Warn user if inside contains nans (see Bug 3460) (#869) Nov 6, 2018
ft_sourcestatistics.m made the randomseed pre/postamble more consistent Aug 25, 2018
ft_sourcewrite.m improved the help, no functional changes Sep 30, 2017
ft_statistics_analytic.m ENH - added a check in the input arguments, point to high-level FT fu… Mar 5, 2018
ft_statistics_crossvalidate.m ENH - added a check in the input arguments, point to high-level FT fu… Mar 5, 2018
ft_statistics_montecarlo.m FIX bug3464 - do not mix warning and ft_warning, return the warning Nov 1, 2018
ft_statistics_stats.m Implement Pearson's correlation in ft_statistics_stats Mar 27, 2018
ft_steadystatesimulation.m ensure correct use of ft_preamble_provenance Aug 26, 2018
ft_stratify.m FIX - ft_stratify called ft_getopt without the cfg parameter Nov 8, 2017
ft_timelockanalysis.m ENH - add sampleinfo to output of multi-trial timelock structure + up… Nov 24, 2017
ft_timelockbaseline.m do not allow baselinetype in ft_timelockbaseline Oct 3, 2017
ft_timelockgrandaverage.m remove timelock.trial when timelock.avg is present, this should happen Sep 15, 2017
ft_timelocksimulation.m made the rollback more consistent Oct 2, 2018
ft_timelockstatistics.m made the randomseed pre/postamble more consistent Aug 25, 2018
ft_topoplotCC.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_topoplotER.m fixed highlighting options, especially for clusterplot Oct 6, 2017
ft_topoplotIC.m Function ft_topoplotIC – small bug fix → if cfg.showcallinfo is set t… Sep 12, 2018
ft_topoplotTFR.m fixed highlighting options, especially for clusterplot Oct 6, 2017
ft_volumebiascorrect.m FIX - removed scaling and added some additional pre-processing to mak… Jul 6, 2017
ft_volumedownsample.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_volumelookup.m add cfg.minqueryrange to enable probabilistic labeling May 12, 2018
ft_volumenormalise.m FIX bug3464 - do not mix warning and ft_warning, return the warning Nov 1, 2018
ft_volumerealign.m ENH - use keepfields in the creation of tmpcfg, to pass on potentiall… ( Oct 26, 2018
ft_volumereslice.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_volumesegment.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
ft_volumewrite.m automatically synchronized identical files to 6d48716 Jul 4, 2017
ft_wizard.m automatically synchronized identical files to 898ce79 Feb 19, 2016
imotions2fieldtrip.m Remove tilde when used to ignore any but last function outputs Oct 10, 2018
loreta2fieldtrip.m automatically synchronized identical files to 6d48716 Jul 4, 2017
nutmeg2fieldtrip.m ensure correct use of ft_preamble_provenance Aug 26, 2018
spass2fieldtrip.m automatically synchronized identical files to 6d48716 Jul 4, 2017
spm2fieldtrip.m automatically synchronized identical files to 6d48716 Jul 4, 2017

README

FieldTrip is the MATLAB toolbox for MEG and EEG analysis that is being
developed at the Donders Institute for Brain, Cognition and Behaviour
together with collaborating institutes.

The toolbox includes algorithms for simple and advanced analysis
of MEG and EEG data, such as time-frequency analysis, source
reconstruction using dipoles, distributed sources and beamformers
and non-parametric statistical testing. It supports the data formats
of all major MEG systems (CTF, Neuromag, 4D/BTi) and of the most popular
EEG systems, and new formats can be added easily. FieldTrip contains
high-level functions that you can use to construct your own analysis
protocol in MATLAB. Furthermore, it easily allows developers to
incorporate low-level algorithms for new EEG/MEG analysis methods.

For more information please visit http://www.fieldtriptoolbox.org

The FieldTrip software is free but copyrighted software, distributed
under the terms of the GNU General Public Licence as published by
the Free Software Foundation (either version 2, or at your option
any later version). See the file COPYING for more details.

The functions in the FieldTrip toolbox are copyrighted by their respective authors:
  Robert Oostenveld, DCCN, FCDC, SMI, MBFYS
  Jan-Mathijs Schoffelen, DCCN, MPI, CCNi, FCDC
  Roemer van der Meij, DCC
  Jorn Horschig, DCCN
  Eelke Spaak, DCCN
  Arjen Stolk, DCCN
  Lilla Magyari, DCCN, MPI
  Vladimir Litvak, UCL
  Pascal Fries, FCDC
  Markus Bauer, FCDC
  Ole Jensen, FCDC
  Markus Siegel, FCDC, UKE
  Jens Schwarzbach, FCDC
  Eric Maris, DCC, FCDC
  Ingrid Nieuwenhuis, DCCN, FCDC
  Saskia Haegens, DCCN, FCDC
  Martin Vinck, DCCN, SILS
  and many others ...

Copyright (C) 2008-2017, Donders Institute for Brain, Cognition and Behaviour, Radboud University, The Netherlands (DCCN, DCC, DCN)
Copyright (C) 2012-2017, Max Planck Institute for Psycholinguistics, The Netherlands (MPI)
Copyright (C) 2008-2017, The Wellcome Trust Centre for Neuroimaging, University College London, UK (UCL)
Copyright (C) 2010-2013, Swammerdam Institute for Life Sciences, University of Amsterdam (SILS)
Copyright (C) 2008-2009, Centre for Cognitive Neuroimaging in Glasgow, United Kingdom (CCNi)
Copyright (C) 2009-2009, Netherlands Institute for Neuroscience (NIN)
Copyright (C) 2003-2008, F.C. Donders Centre, Radboud University Nijmegen, The Netherlands (FCDC)
Copyright (C) 2004-2007, Nijmegen Institute for Cognition and Information, The Netherlands (NICI)
Copyright (C) 2004-2005, Universitatsklinikum Hamburg-Eppendorf, Germany (UKE)
Copyright (C) 2003-2004, Center for Sensory Motor Interaction, University Aalborg, Denmark (SMI)
Copyright (C) 1999-2003, Department of Medical Physics, Radboud University Nijmegen, The Netherlands (MBFYS)

The FieldTrip software is a toolbox, i.e. a library with functions. The release 
of this toolbox includes functions from other toolboxes that are covered under 
their respective licenses. See fieldtrip/external for details.