The MATLAB software toolbox for MEG and EEG analysis
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Latest commit 5d2f909 Sep 28, 2016 @schoffelen schoffelen committed on GitHub Merge pull request #227 from schoffelen/lcmv
lcmv: some updates with respect to subspace and regularization + invCy^2 computed only once
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@config FIX - resolved regression error in test_config, which might be due to Mar 4, 2016
bin FIX - mesh2edge was not synched properly, see http://bugzilla.fieldtr… Aug 23, 2016
compat FIX - hotfix for nargin/ft_nargin bug, primarily in ft_selectdata bu… Jun 14, 2016
connectivity DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
contrib Changed tfplot method from 'mesh' to 'surf' -- seems to consistently … Sep 26, 2016
engine automatically synchronized identical files to 2c5107d Jun 22, 2016
external DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
fileio ENH - allow megplanar as selection group in ft_channelselection for n… Sep 27, 2016
forward ENH - allow megplanar as selection group in ft_channelselection for n… Sep 27, 2016
inverse Merge pull request #227 from schoffelen/lcmv Sep 28, 2016
multivariate restructuring - removed stuff from multivariate directory, see http:/… Jun 6, 2012
peer automatically synchronized identical files to 2c5107d Jun 22, 2016
plotting ENH - allow megplanar as selection group in ft_channelselection for n… Sep 27, 2016
preproc ENH - use two input arguments for exist() function, see http://bugzil… Apr 28, 2016
private automatically synchronized identical files to 88181f7 Sep 15, 2016
qsub ENH - increased default sleep from 0.1 to 0.5, see also #221 Sep 24, 2016
realtime do not break in equals case Sep 27, 2016
specest ENH - numerous small changes, primarily removing the ; at the end of … Jun 22, 2016
src automatically synchronized identical files to 898ce79 Feb 19, 2016
statfun enhancement - vectorized computations for major speedup Jul 15, 2016
template ENH - created up-to-date template headmodels (replacing pnt with pos)… Feb 22, 2016
test Merge branch 'master' of github.com:fieldtrip/fieldtrip Sep 20, 2016
trialfun automatically synchronized identical files to 898ce79 Feb 19, 2016
utilities ENH - allow megplanar as selection group in ft_channelselection for n… Sep 27, 2016
.gitignore updated gitignore file May 13, 2016
COPYING more cleanups on the svn properties Feb 3, 2011
Contents.m documentation - use MATLAB instead of matlab or Matlab, see http://bu… Feb 11, 2015
README Revert "Merge branch 'master' of github.com:robertoostenveld/fieldtrip" Feb 4, 2016
besa2fieldtrip.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
edf2fieldtrip.m automatically synchronized identical files to 898ce79 Feb 19, 2016
fieldtrip2besa.m replace squeeze with reshape, where appropriate Jun 10, 2016
fieldtrip2ctf.m automatically synchronized identical files to 898ce79 Feb 19, 2016
fieldtrip2fiff.m automatically synchronized identical files to 898ce79 Feb 19, 2016
fieldtrip2spss.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
ft_analysispipeline.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_annotate.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_anonimizedata.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_appenddata.m ENH - numerous small changes as suggested by the MATLAB coder for com… Jun 22, 2016
ft_appendfreq.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_appendsource.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_appendspike.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_appendtimelock.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_clip.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_ecg.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_eog.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_jump.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_muscle.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_artifact_threshold.m FIX - support input data, also if cfg.trl is not specified Mar 9, 2016
ft_artifact_tms.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
ft_artifact_zvalue.m ENH - attempt to improve the keyboard handling for interactive=yes on… Jul 12, 2016
ft_audiovideobrowser.m FIX - play back stereo correcly, i.e. different channels show up in s… Mar 1, 2016
ft_channelnormalise.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_channelrepair.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_channelselection.m fix - #3135 - fixed substring instead of fullstring matching in ft_ch… Jun 10, 2016
ft_clusterplot.m replace squeeze with reshape, where appropriate Jun 10, 2016
ft_combineplanar.m changed bugs according to suggestion from JM #197 Jul 21, 2016
ft_componentanalysis.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_conjunctionanalysis.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_connectivityanalysis.m enhancement - get correct dimord in output with labelcmb May 14, 2016
ft_connectivityplot.m enhancement - added legend if multiple input + general clean up May 18, 2016
ft_connectivitysimulation.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_crossfrequencyanalysis.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_databrowser.m ENH - introduced cfg.plotevents option to ft_databrowser. Aug 17, 2016
ft_defacemesh.m ENH - added support for defacing meshes or removing unwanted sections… Jun 14, 2016
ft_defacevolume.m ENH - improved defacing of triangulated meshes and source models, see h… Jul 13, 2016
ft_defaults.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_definetrial.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_denoise_pca.m ENH - enhanced provenance in teh output (nesting and amount of detail… May 31, 2016
ft_denoise_synthetic.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_detect_movement.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
ft_dipolefitting.m DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
ft_dipolesimulation.m ENH - implemented function to simulate timelock data structures, i.e.… May 22, 2016
ft_electrodeplacement.m ENH: changed initial scatterplot limits to a more conservative thresh… Sep 23, 2016
ft_electroderealign.m FIX - also call poly2tri, see #215 Sep 6, 2016
ft_examplefunction.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqanalysis.m restore original defaults but keep new options for cfg.toi & cfg.pad Jul 14, 2016
ft_freqanalysis_mvar.m updated ft_freqanalysis_mvar to deal with univariate models Mar 7, 2016
ft_freqbaseline.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqcomparison.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_freqdescriptives.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqgrandaverage.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqinterpolate.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_freqsimulation.m ENH - implemented function to simulate timelock data structures, i.e.… May 22, 2016
ft_freqstatistics.m ENH - always use 2nd input argument for exist() function, see http://… Apr 28, 2016
ft_globalmeanfield.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_headmovement.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_interactiverealign.m ENH - overall improvements for interactive realignment May 31, 2016
ft_interpolatenan.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_lateralizedpotential.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_layoutplot.m bugfix - initialized hasdata as variable, to fix bug 3132 May 29, 2016
ft_math.m enhancement - also output trialinfo and sampleinfo Aug 18, 2016
ft_megplanar.m FIX - replace pnt by pos in the data structures used in the code, see h… Feb 28, 2016
ft_megrealign.m FIX - replace pnt by pos in the data structures used in the code, see h… Feb 28, 2016
ft_movieplotER.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_movieplotTFR.m DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
ft_multiplotCC.m ENH - always use 2nd input argument for exist() function, see http://… Apr 28, 2016
ft_multiplotER.m ENH - make xlim/ylim consistent throughout the high-level code, do no… Sep 13, 2016
ft_multiplotTFR.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_mvaranalysis.m Revert "bugfix - cleaned up some stuff related to bvar processing" Jul 5, 2016
ft_neighbourplot.m ENH - consistent handling of nargin, allow data to be read from disk … Feb 22, 2016
ft_networkanalysis.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_prepare_bemmodel.m FIX - resolved a variety of small bugs that was detected while running Feb 28, 2016
ft_prepare_concentricspheres.m FIX - replace pnt by pos in the data structures used in the code, see h… Feb 28, 2016
ft_prepare_headmodel.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_prepare_layout.m Merge branch 'master' of https://github.com/fieldtrip/fieldtrip Sep 5, 2016
ft_prepare_leadfield.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_prepare_localspheres.m FIX - replace pnt by pos in the data structures used in the code, see h… Feb 28, 2016
ft_prepare_mesh.m improve documentation for dykstra2012 algorithm Jun 14, 2016
ft_prepare_neighbours.m FIX - don't do consistency check on sensor definition that was create… Jun 14, 2016
ft_prepare_singleshell.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_prepare_sourcemodel.m ENH - added some sanity checks, extended test script. See http://bugz… Jun 1, 2016
ft_preprocessing.m fix - keeping opto field for nirs data Sep 1, 2016
ft_qualitycheck.m replace squeeze with reshape, where appropriate Jun 10, 2016
ft_recodeevent.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_redefinetrial.m enhancement - allow for datatype comp specific fields to be passed on… Apr 20, 2016
ft_regressconfound.m replace squeeze with reshape, where appropriate Jun 10, 2016
ft_rejectartifact.m ENH - consistent handling of nargin, allow data to be read from disk … Feb 22, 2016
ft_rejectcomponent.m FIX - resolve nargin issue reported by Maarten, see http://bugzilla.f… Feb 22, 2016
ft_rejectvisual.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_removetemplateartifact.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_removetmsartifact.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_resampledata.m bugfix - allocate a default for resampleindex Apr 1, 2016
ft_scalpcurrentdensity.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_sensorrealign.m FIX - replace pnt by pos in the data structures used in the code, see h… Feb 28, 2016
ft_singleplotER.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_singleplotTFR.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_sliceinterp.m replaced squeeze with shiftdim or reshape where appropriate Jun 10, 2016
ft_sourceanalysis.m DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
ft_sourcedescriptives.m ENH - use the new fieldtriptoolbox.org URL instead of fcdonders Jun 14, 2016
ft_sourcegrandaverage.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_sourceinterpolate.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_sourcemovie.m replaced squeeze with shiftdim or reshape where appropriate Jun 10, 2016
ft_sourceparcellate.m ENH - consistent handling of nargin, allow data to be read from disk … Feb 22, 2016
ft_sourceplot.m unsqueezed yet another few functions Jun 10, 2016
ft_sourcestatistics.m ENH - always use 2nd input argument for exist() function, see http://… Apr 28, 2016
ft_sourcewrite.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_statistics_analytic.m automatically synchronized identical files to 898ce79 Feb 19, 2016
ft_statistics_crossvalidate.m unsqueezed yet another few functions Jun 10, 2016
ft_statistics_montecarlo.m enhancement - only throw warning about cluster p-value for first clus… May 5, 2016
ft_statistics_stats.m automatically synchronized identical files to 898ce79 Feb 19, 2016
ft_stratify.m ENH - consistent handling of nargin, allow data to be read from disk … Feb 22, 2016
ft_surfacerealign.m renamed ft_meshrealign to ft_surfacerealign Apr 4, 2016
ft_timelockanalysis.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_timelockbaseline.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_timelockgrandaverage.m unsqueezed yet another few functions Jun 10, 2016
ft_timelocksimulation.m ENH - implemented function to simulate timelock data structures, i.e.… May 22, 2016
ft_timelockstatistics.m ENH - always use 2nd input argument for exist() function, see http://… Apr 28, 2016
ft_topoplotCC.m bugfix - fixed issue with hasdata in ft_topoplotCC: this does not rea… Mar 23, 2016
ft_topoplotER.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_topoplotIC.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_topoplotTFR.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_volumedownsample.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_volumelookup.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_volumenormalise.m DOC - replaced fieldtrip by FieldTrip Sep 13, 2016
ft_volumerealign.m ENH - add space after comma in function arguments, no functional changes Aug 18, 2016
ft_volumereslice.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_volumesegment.m FIX - fixed problem with printing invalid cfg.output, which is a cell… May 12, 2016
ft_volumewrite.m ENH - use ft_abort instead of abort variable in combination with ft_p… Feb 22, 2016
ft_wizard.m automatically synchronized identical files to 898ce79 Feb 19, 2016
loreta2fieldtrip.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
nutmeg2fieldtrip.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
spass2fieldtrip.m ENH - use ft_revision, ft_nargin and ft_nargout to address http://bug… Feb 22, 2016
spm2fieldtrip.m ENH - some cleanups to function declaration Jan 19, 2016

README

FieldTrip is the MATLAB toolbox for MEG and EEG analysis that is being
developed at the Donders Institute for Brain, Cognition and Behaviour
together with collaborating institutes.

The toolbox includes algorithms for simple and advanced analysis
of MEG and EEG data, such as time-frequency analysis, source
reconstruction using dipoles, distributed sources and beamformers
and non-parametric statistical testing. It supports the data formats
of all major MEG systems (CTF, Neuromag, 4D/BTi) and of the most popular
EEG systems, and new formats can be added easily. FieldTrip contains
high-level functions that you can use to construct your own analysis
protocol in MATLAB. Furthermore, it easily allows developers to
incorporate low-level algorithms for new EEG/MEG analysis methods.

For more information please visit http://www.fieldtriptoolbox.org

The FieldTrip software is free but copyrighted software, distributed
under the terms of the GNU General Public Licence as published by
the Free Software Foundation (either version 2, or at your option
any later version). See the file COPYING for more details.

The functions in the FieldTrip toolbox are copyrighted by their respective authors:
  Robert Oostenveld, DCCN, FCDC, SMI, MBFYS
  Jan-Mathijs Schoffelen, DCCN, MPI, CCNi, FCDC
  Roemer van der Meij, DCC
  Jorn Horschig, DCCN
  Eelke Spaak, DCCN
  Arjen Stolk, DCCN
  Lilla Magyari, DCCN, MPI
  Vladimir Litvak, UCL
  Pascal Fries, FCDC
  Markus Bauer, FCDC
  Ole Jensen, FCDC
  Markus Siegel, FCDC, UKE
  Jens Schwarzbach, FCDC
  Eric Maris, DCC, FCDC
  Ingrid Nieuwenhuis, DCCN, FCDC
  Saskia Haegens, DCCN, FCDC
  Martin Vinck, DCCN, SILS
  and others ...

Copyright (C) 2008-2013, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands (DCCN, DCC, DCN)
Copyright (C) 2012-2013, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands (MPI)
Copyright (C) 2008-2013, The Wellcome Trust Centre for Neuroimaging, University College London, UK (UCL)
Copyright (C) 2010-2013, Swammerdam Institute for Life Sciences, University of Amsterdam (SILS)
Copyright (C) 2008-2009, Centre for Cognitive Neuroimaging in Glasgow, United Kingdom (CCNi)
Copyright (C) 2009-2009, Netherlands Institute for Neuroscience (NIN)
Copyright (C) 2003-2008, F.C. Donders Centre, Radboud University Nijmegen, The Netherlands (FCDC)
Copyright (C) 2004-2007, Nijmegen Institute for Cognition and Information, The Netherlands (NICI)
Copyright (C) 2004-2005, Universitatsklinikum Hamburg-Eppendorf, Germany (UKE)
Copyright (C) 2003-2004, Center for Sensory Motor Interaction, University Aalborg, Denmark (SMI)
Copyright (C) 1999-2003, Department of Medical Physics, Radboud University Nijmegen, The Netherlands (MBFYS)

The FieldTrip software is a toolbox, i.e. a library with functions.
The release includes functions from other toolboxes that are covered
under their respective licenses. See fieldtrip/external for details.