Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Optimize getFastaFromBed #1

Open
fischuu opened this issue Jul 7, 2016 · 0 comments
Open

Optimize getFastaFromBed #1

fischuu opened this issue Jul 7, 2016 · 0 comments
Labels
enhancement

Comments

@fischuu
Copy link
Owner

fischuu commented Jul 7, 2016

Currently the function loops through all entries in a bed data frame and loads one fasta file after another. This could be optimized by looping through the required Chromosomes instead, then each chromosomal fasta file would only be loaded once.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fischuu