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flowr run x=fastq_bam_bwa fqs1=$fqs1 fqs2=$fqs2 samplename=samp execute=TRUE platform=local rerun_wd=output/runs/fastq_bam_bwa-samp-20151201-18-07-17-aiJFUNjt start_from=aln1
This fails with the error:
-> Flow is being processed. Track it from cmd line using:
flowr status x=/Users/sahilseth/Dropbox2/Dropbox/public/flow-r/fastq_bam/output/runs/fastq_bam_bwa-samp-20151201-18-07-17-aiJFUNjt
OR from R using:
status(x='/Users/sahilseth/Dropbox2/Dropbox/public/flow-r/fastq_bam/output/runs/fastq_bam_bwa-samp-20151201-18-07-17-aiJFUNjt')
| | 0%sh: msub: command not found
Error in system(cmd, intern = TRUE) : error in running command
Error in x$value : $ operator is invalid for atomic vectors
The text was updated successfully, but these errors were encountered:
For example if we run:
This fails with the error:
The text was updated successfully, but these errors were encountered: