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add a new plot (ideogram) #7

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fmalmeida opened this issue Sep 4, 2021 · 2 comments
Open

add a new plot (ideogram) #7

fmalmeida opened this issue Sep 4, 2021 · 2 comments
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enhancement New feature or request

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@fmalmeida
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Generate a ideogram plot (with karyoploteR) using a feature type or attribute key selected by the user.

Obs: It would require a .fai (samtools faidx) or genome file as input to get the chr sizes.

@fmalmeida fmalmeida self-assigned this Sep 4, 2021
@fmalmeida fmalmeida added the enhancement New feature or request label Sep 4, 2021
@fmalmeida
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Already being tackled in https://github.com/fmalmeida/gff-toolbox/tree/develop develop branch.

It is already producing the plot. Just needs to update the documentation, the conda recipe and requirements, and make better defaults for the plot.

@fmalmeida
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This module seems almost ready. Already implements with compressed or uncompressed files. But, for now it only plots one feature at a time.

Must make this module understand more than one feature, and plot them with different colors

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