Skip to content

fhuwer/JUNE_germany

Repository files navigation

JUNE Germany: open-source individual-based epidemiology simulation

This is the repository of the JUNE Germany project. It is based on version 1 of the JUNE project by the IDAS-Durham group see JUNE with minor changes to work for Germany.

Dataset

Due to licenses the dataset is not shared publicly. If you are interested in receiving a copy of the dataset, please contact Friedemann Neuhaus (fneuhaus@cern.ch) and Matthias Schott (mschott@cern.ch).

Setup

To install JUNE Germany, clone the repository and install it using

pip install -e .

This should be done in a virtual environment. It will require a working installation of OpenMPI or IntelMPI to compile mpi4py.

We tested everything with python3.8 only!

How to use the code

In Notebooks/quickstart.ipynb a small introduction is given on how JUNE Germany works. It is mostly the same as in the original JUNE project.

Tests

Run the tests with

cd test_june
pytest

Thanks

We would like to thank the original authors of the JUNE project for laying the groundwork of this project and their support for adapting it to Germany.

About

No description, website, or topics provided.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published