Investigate the issues reported to Binnie-Patcher

[mezz]

https://github.com/Chocohead/Binnie-Patcher/issues

We should make sure major the issues reported there are resolved in this version.

• GUIs do not always update their displayed items GUIs do not always update their displayed items Chocohead/Binnie-Patcher#3
• Alveary Mutator Not Guaranteeing Pure Mutation Alveary Mutator Not Guaranteeing Pure Mutation  Chocohead/Binnie-Patcher#10
• wax capsules and cans being removed from buildcraft wax capsules and cans being removed from buildcraft Chocohead/Binnie-Patcher#21
• OreDict wooden gears, please? OreDict wooden gears, please? Chocohead/Binnie-Patcher#22
• Buckets get eaten Buckets get eaten Chocohead/Binnie-Patcher#24
• Saplings are the wrong colors Saplings are the wrong colors Chocohead/Binnie-Patcher#25
• Disabling Lepidopterology in Forestry causes crash Disabling Lepidopterology in Forestry causes Binnie to crash the game Chocohead/Binnie-Patcher#29

[Chocohead]

• The GUI weirdness was to do with the way Binnie implemented them using his own system
• The Alveary Mutator I never fully worked out, it may have cancelled itself out not implementing something properly, but the mutation chance boost was always calculated correctly at the very least
• The wax and cans were strange, I always thought it was compat changing somewhere else triggering it rather than an explicit bug in anything Binnie did
• The gears was a suggestion rather than a bug, it was Gregtech that always used to add them rather than Binnie for older packs (as Greg liked doing that for mods)
• Buckets vanishing was down to Binnie not marking the containers for being reusable from what I remember, or something along those lines
• The missing sapling colour was me forgetting to apply the overlay to the icons when I moved bits around
• The Lepidopterology crash was from Binnie just presuming the items would be there for recipes, potentially from them changing module (or he could have just overlooked it)