Rule assemblyVis has commented out two relevant lines

[matrs]

metaGEM/Snakefile

Line 327 in ae3e5e3

#mv assembly.stats {config[path][root]}/{config[folder][stats]}

metaGEM/Snakefile

Line 330 in ae3e5e3

#Rscript {config[path][root]}/{config[folder][scripts]}/{config[scripts][assemblyVis]}

Hey, this two lines and the remove of the redundant plot are commented out, so the task fails

[franciscozorrilla]

Hi, thanks for pointing that out! I must have been testing/prototyping and forgot to uncomment those lines, will fix ASAP.
Also, the visualization rules R scripts are pretty basic although still useful for quick visualization, I will update them in a coming patch to make nicer/more custom plots.