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Cant build due to postgres issue #22
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I believe this would need to fixed at the base container level (https://hub.docker.com/r/bgruening/galaxy-stable/) |
Hi Christian, this is probably due to a docker bug (?) with your storage backend. Please change your storage backend to aufs, I suppose you are using devicemapper? Cheers, |
@bgruening Christian is not a part of the conversation here. @wookoouk could you please point him here? |
Didn't I link him to it in the email? On Wed, 4 Nov 2015, 15:11 Martin Cech notifications@github.com wrote:
|
I do not see the email you sent him. |
ah, ok @martenson, I did link him in the email (I cc'd you) so hopefully he will follow the link, if now Ill update him via email on the progress. |
Inbox hiding stuff from me. I am sorry for the confusion. |
it seems that the bug is fixed when upgrading to postgresql-9.4 (Ubuntu 14.04 has version 9.3).
Then I upgraded to postgresql 9.4 with:
Then it works.
When I create an image from the Dockerfile with
I get:
Has anybody a clue why this fails? -- greetings, Christian |
The postgresql setup is way more complex than it seems. We are setting default users and passwords and we need to take care that it is possible to store the DB outside of the container. I think it is a bad idea to change this in a child container, as this will break everything what was build in the parents, including the ansible playbook setup. |
Dear Martin (Page),
I have tried the Galaxy Flavor Generator (using
http://bit.ly/galaxy-flavor-generator)
I have selected only a few programs (see Dockerfile at the end of my
email). When I try to create a docker image with
sudo docker build -t galaxyexomfastqcutadapt .
(I am running docker as the galaxy user which is a sudoer)
I get the following error:
[...]
2015-11-04 12:57:37 UTC FATAL: could not access private key file
"/etc/ssl/private/ssl-cert-snakeoil.key": Permission denied
...fail!
starting Galaxy
Galaxy could not be started.
It seems to be a problem with docker and postgresql
(puntonim/docker-postgresql93#2)
Any help appreciated!
Best regards,
Christian Rausch
VU University Medical Center Amsterdam
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