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@nsoranzo nsoranzo released this Dec 17, 2018 · 27 commits to master since this release

  • Added supported for Python 3.7. Added support for Galaxy releases 18.05 and 18.09.

  • Added update_library_dataset() method to LibraryClient (thanks to Anthony Bretaudeau).

  • Added preserve_dirs and tag_using_filenames parameters to upload_file_from_server() and upload_from_galaxy_filesystem() methods of LibraryClient (thanks to Anthony Bretaudeau).

  • Removed deprecated wait_for_completion parameter of DatasetClient.download_dataset() method.

  • BioBlend.objects: added genome_build and misc_info attributes to Dataset objects. Moved deleted attribute from Dataset to HistoryDatasetAssociation and LibraryDatasetDatasetAssociation objects. Moved purged attribute from Dataset to HistoryDatasetAssociation objects.

  • BioBlend.objects: added update() method to LibraryDataset (thanks to Anthony Bretaudeau).

  • Run tests with pytest instead of nose.

Assets 2

@nsoranzo nsoranzo released this Apr 25, 2018

  • Dropped supported for Python 3.3. Added support for Galaxy release 18.01.

  • Always wait for terminal state when downloading a dataset.

  • Deprecated wait_for_completion parameter of DatasetClient.download_dataset() method.

  • Fixed downloading of datasets receiving a HTTP 500 status code (thanks to Eric Rasche).

  • Added wait_for_dataset() method to LibraryClient.

  • Added verify parameter to GalaxyInstance.__init__() method (thanks to Devon Ryan).

  • Improvements to tests and documentation.

Assets 2

@nsoranzo nsoranzo released this Sep 26, 2017 · 83 commits to master since this release

  • Dropped support for Python 2.6. Added support for Galaxy release 17.09.

  • Added contents parameter to FoldersClient.show_folder() method (thanks to Eric Rasche).

  • Exposed the verify attribute of GalaxyInstance and ToolShedInstance objects as __init__() parameter.

  • Added create_role() method to RolesClient (thanks to Ashok Varadharajan).

  • Added timeout parameter to GalaxyClient.__init__() method.

  • Added publish parameter to import_workflow_dict() and import_workflow_from_local_path() methods of WorkflowClient (thanks to Marco Enrico Piras).

  • BioBlend.objects: added publish parameter to ObjWorkflowClient.import_new() method (thanks to Marco Enrico Piras).

  • Do not check for mismatching content size when streaming a dataset to file (reported by Jorrit Boekel).

  • Fixed delete requests when Galaxy uses external authentication (thanks to Eric Rasche).

  • Fixed retrieval of the API key when a GalaxyClient object is initialised with email and password on Python 3 (thanks to Marius van den Beek).

  • Documentation improvements.

Assets 2

@nsoranzo nsoranzo released this May 25, 2017

  • Dropped support for Galaxy releases 14.02, 14.04, 14.06 and 14.08. Added
    support for Python 3.5 and 3.6, and Galaxy releases 16.07, 16.10, 17.01 and
    17.05.

  • Deprecated import_workflow_json() and export_workflow_json() methods
    of WorkflowClient in favor of import_workflow_dict() and
    export_workflow_dict() (reported by @manabuishii)

  • Deprecated show_stderr() and show_stdout() methods of
    DatasetClient in favour of JobsClient.show_job() with
    full_details=True.

  • Added install_dependencies() method to ToolClient (thanks to Marius
    van den Beek).

  • Added reload_data_table() method to ToolDataClient (thanks to Marius
    van den Beek).

  • Added create_folder(), update_folder(), get_permissions(),
    set_permissions() methods to FoldersClient (thanks to Eric Rasche).

  • Added get_version() method to ConfigClient (thanks to Eric Rasche).

  • Added get_user_apikey() method to UserClient (thanks to Eric Rasche).

  • Added create_quota(), update_quota(), delete_quota() and
    undelete_quota() methods to QuotaClient (thanks to Eric Rasche).

  • Added purge parameter to HistoryClient.delete_dataset() method.

  • Added f_email, f_name, and f_any parameters to
    UserClient.get_users() method (thanks to Eric Rasche).

  • Updated WorkflowClient.import_shared_workflow() method to use the newer
    Galaxy API request (thanks to @DamCorreia).

  • Fixed HistoryClient.update_history() and History.update() methods
    when name parameter is not specified

  • Added warning if content size differs from content-length header in
    DatasetClient.download_dataset()

  • BioBlend.objects: added purge parameter to
    HistoryDatasetAssociation.delete() method.

  • BioBlend.objects: added purged attribute to Dataset objects.

  • BioBlend.objects: added published attribute to History objects.

  • Code refactoring, added tests and documentation improvements.

Assets 2

@afgane afgane released this Aug 11, 2016 · 224 commits to master since this release

  • Removed deprecated method create_user() of UserClient.
  • Deprecated HistoryClient.download_dataset() in favor of
    DatasetClient.download_dataset().
  • Modified update_dataset(), update_dataset_collection() and
    update_history() methods of HistoryClient to return the details
    instead of the status code.
  • Modified update_dataset(), update_dataset_collection() and
    update_history() methods of HistoryClient to return the details
    instead of the status code.
  • Modified GalaxyClient.make_put_request() to return the decoded response
    content.
  • Added install_resolver_dependencies parameter to
    ToolShedClient.install_repository_revision(), applicable for Galaxy
    release_16.07 and later (thanks to Marius van den Beek).
  • Improve DatasetClient.download_dataset() by downloading the dataset in
    chunks when saving to file (thanks to Jorrit Boekel).
  • Added bioblend.toolshed.categories.ToolShedCategoryClient;
    renamed bioblend.toolshed.repositories.ToolShedClient class to
    bioblend.toolshed.repositories.ToolShedRepositoryClient;
    renamed bioblend.toolshed.tools.ToolShedClient class to
    bioblend.toolshed.tools.ToolShedToolClient.
  • Added delete_user() method to UserClient.
  • BioBlend.objects: added update() method to HistoryDatasetAssociation.
  • BioBlend.objects: added annotation and genome_build attributes to
    HistoryDatasetAssociation objects.
  • BioBlend.objects: added update() method to HistoryDatasetAssociation.
  • BioBlend.objects: added ability to create and delete dataset collections
    (thanks to Alex MacLean).
  • BioBlend.objects: added dataset collections to the outputs of
    Workflow.run().
  • Added ability to launch Galaxy CloudMan instances into AWS VPC.
  • A number of testing tweaks, documentation improvements and minor fixes.
Assets 2
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