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bring in @nsoranzo's comments
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martenson committed Jan 31, 2017
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Showing 1 changed file with 25 additions and 34 deletions.
59 changes: 25 additions & 34 deletions doc/source/releases/17.01.rst
Expand Up @@ -15,22 +15,25 @@ Enhancements
.. feature
* New User Preferences User Interface
(thanks to `@bgruening <https://github.com/bgruening>`__).
(thanks to `@anuprulez <https://github.com/anuprulez>`__ and `@bgruening <https://github.com/bgruening>`__).
`Pull Request 3118`_
* Per user total walltime limit.
(thanks to `@interactomix <https://github.com/interactomix>`__).
(thanks to `@maxf130 <https://github.com/maxf130>`__).
`Pull Request 3217`_
* Add API to install resolver tool dependencies
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 3222`_
* Replace CasperJS browser tests with Selenium tests.
`Pull Request 3239`_
* Genbank datatype
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 3339`_
* Expose metrics to non-admins
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 3344`_
* Support for gzipped fastq formats
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 3145`_
* Fuzzy search for tools search
(thanks to `@anuprulez <https://github.com/anuprulez>`__).
`Pull Request 3356`_
* Target Miniconda3 when installing Conda.
`Pull Request 3419`_

.. enhancement
Expand All @@ -40,17 +43,9 @@ Enhancements
* Add cached dependency manager
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 3106`_
* Support for gzipped fastq formats
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 3145`_
* Version 17.01.dev
`Pull Request 3192`_
* update rename dataset action to accept . in repeat input parameters
(thanks to `@scholtalbers <https://github.com/scholtalbers>`__).
`Pull Request 3197`_
* Fix user table in admin view
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 3200`_
* Fix for mapping tools with paired collection input and a structured_like tag
over list:paired collections
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
Expand All @@ -60,6 +55,8 @@ Enhancements
* Fix I201 errors from flake8-import-order
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 3215`_
* Replace CasperJS browser tests with Selenium tests.
`Pull Request 3239`_
* 3 enhancements for the SLURM job runner
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 3218`_
Expand All @@ -71,7 +68,7 @@ Enhancements
* Further tighten up GG format.
`Pull Request 3233`_
* change conda channel order
(thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 3237`_
* Sort environment variables in job info page
(thanks to `@erasche <https://github.com/erasche>`__).
Expand All @@ -93,7 +90,7 @@ Enhancements
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 3301`_
* Bring in galaxyproject/galaxy-lib`#36
<https://github.com/galaxyproject/galaxy/issues/36>`__ from @bgruening.
<https://github.com/galaxyproject/galaxy-lib/pull/36>`__ from @bgruening.
`Pull Request 3304`_
* Update datatype converter tools
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
Expand All @@ -120,9 +117,6 @@ Enhancements
* Cache depencencies on the fly when first used
(thanks to `@abretaud <https://github.com/abretaud>`__).
`Pull Request 3348`_
* Fuzzy search for tools search
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 3356`_
* Limit adjusting Galaxy's Python environment to legacy tools.
`Pull Request 3364`_
* Remove defunct script run_selenium_tests.sh.
Expand All @@ -135,25 +129,18 @@ Enhancements
(thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
`Pull Request 3378`_
* Add diamond database as datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
(thanks to `@bgruening <https://github.com/bgruening>`__ and `@bebatut <https://github.com/bebatut>`__).
`Pull Request 3379`_
* Added image datatypes
(thanks to `@ThomasWollmann <https://github.com/ThomasWollmann>`__).
`Pull Request 3380`_
* Test cases & small enhancement to workflow renaming PJAs.
`Pull Request 3381`_
* Fix typo
(thanks to `@pvanheus <https://github.com/pvanheus>`__).
`Pull Request 3384`_
* Resolve Conda Dependencies All at Once
`Pull Request 3391`_
* Markdown datatype support.
`Pull Request 3399`_
* extend API version information
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
`Pull Request 3411`_
* Target Miniconda3 when installing Conda.
`Pull Request 3419`_
* Add whoami API
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 3423`_
Expand Down Expand Up @@ -211,6 +198,9 @@ Fixes
.. bug
* Fix user table in admin view
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 3200`_
* Cherrypick masthead fix
`Pull Request 3055`_
* History Introduction tour fixes for structural changes
Expand All @@ -236,6 +226,9 @@ Fixes
`Pull Request 3313`_
* Fix linting of gff_filter_by_attribute.
`Pull Request 3324`_
* Fix typo
(thanks to `@pvanheus <https://github.com/pvanheus>`__).
`Pull Request 3384`_
* More IPython to Jupyter changes
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 3333`_
Expand All @@ -244,7 +237,7 @@ Fixes
* Fix explicit Docker container resolution.
`Pull Request 3346`_
* Masthead Webhook bug fix
(thanks to `@bgruening <https://github.com/bgruening>`__).
(thanks to `@anuprulez <https://github.com/anuprulez>`__).
`Pull Request 3349`_
* Remove seemingly unused file sort_gtf.py.
`Pull Request 3362`_
Expand All @@ -261,9 +254,6 @@ Fixes
`Pull Request 3403`_
* Remoteuser Logout Fix.
`Pull Request 3405`_
* Revert "Markdown datatype support."
(thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
`Pull Request 3408`_
* fix typo
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
`Pull Request 3409`_
Expand Down Expand Up @@ -296,6 +286,9 @@ Fixes
* Fix path to Smat datatype
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 3475`_
* Add API to install resolver tool dependencies
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 3222`_
.. github_links
.. _Pull Request 2679: https://github.com/galaxyproject/galaxy/pull/2679
Expand Down Expand Up @@ -380,14 +373,12 @@ Fixes
.. _Pull Request 3391: https://github.com/galaxyproject/galaxy/pull/3391
.. _Pull Request 3395: https://github.com/galaxyproject/galaxy/pull/3395
.. _Pull Request 3397: https://github.com/galaxyproject/galaxy/pull/3397
.. _Pull Request 3399: https://github.com/galaxyproject/galaxy/pull/3399
.. _Pull Request 3400: https://github.com/galaxyproject/galaxy/pull/3400
.. _Pull Request 3401: https://github.com/galaxyproject/galaxy/pull/3401
.. _Pull Request 3403: https://github.com/galaxyproject/galaxy/pull/3403
.. _Pull Request 3404: https://github.com/galaxyproject/galaxy/pull/3404
.. _Pull Request 3405: https://github.com/galaxyproject/galaxy/pull/3405
.. _Pull Request 3406: https://github.com/galaxyproject/galaxy/pull/3406
.. _Pull Request 3408: https://github.com/galaxyproject/galaxy/pull/3408
.. _Pull Request 3409: https://github.com/galaxyproject/galaxy/pull/3409
.. _Pull Request 3411: https://github.com/galaxyproject/galaxy/pull/3411
.. _Pull Request 3412: https://github.com/galaxyproject/galaxy/pull/3412
Expand Down

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