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Augment registry response
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guerler committed Feb 11, 2018
1 parent c7bf805 commit 26f7248
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Showing 3 changed files with 18 additions and 23 deletions.
34 changes: 13 additions & 21 deletions lib/galaxy/visualization/plugins/registry.py
Original file line number Diff line number Diff line change
Expand Up @@ -190,10 +190,9 @@ def _load_plugin(self, plugin_path):
config_file = os.path.join(plugin_path, 'config', (plugin_name + '.xml'))
config = self.config_parser.parse_file(config_file)
# config file is required, otherwise skip this visualization
if not config:
return None
plugin = self._build_plugin(plugin_name, plugin_path, config)
return plugin
if config is not None:
plugin = self._build_plugin(plugin_name, plugin_path, config)
return plugin

def _build_plugin(self, plugin_name, plugin_path, config):
# TODO: as builder not factory
Expand All @@ -209,13 +208,11 @@ def _build_plugin(self, plugin_name, plugin_path, config):
# from a static file (html, etc)
elif config['entry_point']['type'] == 'html':
plugin_class = vis_plugins.StaticFileVisualizationPlugin

plugin = plugin_class(self.app(), plugin_path, plugin_name, config, context=dict(
return plugin_class(self.app(), plugin_path, plugin_name, config, context=dict(
base_url=self.base_url,
template_cache_dir=self.template_cache_dir,
additional_template_paths=self.additional_template_paths
))
return plugin

def get_plugin(self, key):
"""
Expand Down Expand Up @@ -252,33 +249,28 @@ def get_visualization(self, trans, visualization_name, target_object):

data_sources = visualization.config['data_sources']
for data_source in data_sources:
# log.debug( 'data_source: %s', data_source )
# currently a model class is required
model_class = data_source['model_class']
# log.debug( '\t model_class: %s', model_class )
if not isinstance(target_object, model_class):
continue
# log.debug( '\t passed model_class' )

# TODO: not true: must have test currently
tests = data_source['tests']
if tests and not self.is_object_applicable(trans, target_object, tests):
continue
# log.debug( '\t passed tests' )

param_data = data_source['to_params']
url = self.get_visualization_url(trans, target_object, visualization, param_data)
display_name = visualization.config.get('name', None)
render_target = visualization.config.get('render_target', 'galaxy_main')
embeddable = visualization.config.get('embeddable', False)
# remap some of these vars for direct use in ui.js, PopupMenu (e.g. text->html)
param_data = data_source['to_params']
return {
'href' : url,
'html' : display_name,
'target' : render_target,
'embeddable': embeddable
'name' : visualization.name,
'href' : self.get_visualization_url(trans, target_object, visualization, param_data),
'html' : visualization.config.get('name'),
'description' : visualization.config.get('description'),
'regular' : visualization.config.get('regular'),
'title' : visualization.config.get('title'),
'target' : visualization.config.get('render_target', 'galaxy_main'),
'embeddable' : visualization.config.get('embeddable', False)
}

return None

def is_object_applicable(self, trans, target_object, data_source_tests):
Expand Down
1 change: 0 additions & 1 deletion static/scripts/packed

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6 changes: 5 additions & 1 deletion static/style/blue/base.css

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