Updating requirements.txt as I get wheels ready. TODO: automate OS X

wheels.

requirements.txt

@@ -1,28 +1,16 @@
-#
-# Galaxy has traditionally managed all of its own dependencies (in the form of
-# precompiled Python eggs) for a few reasons:
-#
-# 1. We can ensure that Galaxy works with the versions of the dependencies that
-#    we require.
-# 2. We can precompile them for numerous platforms, meaning that developers or
-#    system administrators attempting to use Galaxy do not need to wait while
-#    dependencies compile/install, nor do they need to have compilers or
-#    various development libraries installed on their system.
-#
-# However, you may want to manage these dependencies on your own. If so, this
-# file can be used with pip to install all of the bare minimum dependencies for
-# starting a Galaxy server. Use this in conjunction with the
-# `GALAXY_ENABLE_EGGS=False` environment variable.
-#
-# Note that except in the case of Whoosh, all dependencies will be installed at
-# their newest versions. Galaxy has not been tested with these and you may
-# (likely?) run into problems! The Galaxy Team does not support using Galaxy
-# with dependency versions other than those in eggs.ini, however, if you do
-# find an incompatibility between Galaxy and the latest version, we would
-# appreciate if you would investigate and provide a code fix for the issue. We
-# are trying to move away from our strict version dependency policy and this
-# would greatly help in our efforts.
+# packages with C extensions
+Cheetah=2.4.4
+bx-python==0.7.3
+MarkupSafe==0.23
+PyYAML==3.11
+SQLAlchemy==1.0.6
+mercurial==3.4.2
+numpy==1.9.2
+pycrypto==2.6.1
 
+# pure Python packages
+
+# TODO
 Paste
 PasteDeploy
 docutils
@@ -32,19 +20,11 @@ amqp
 repoze.lru
 Routes
 WebOb
-SQLAlchemy
-Cheetah
-pycrypto
-MarkupSafe
 WebHelpers
 anyjson
 kombu
-numpy
-bx-python # bx must be installed after numpy!
 pysam
 Mako
-PyYAML
-mercurial
 pytz
 Babel
 decorator