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Use profile="18.01" for BamNative converters
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This is because samtools writes to stderr when sorting/merging large files.
Part of #5496 (comment).
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mvdbeek committed Feb 14, 2018
1 parent adaacbc commit 5ff6be9
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<tool id="CONVERTER_bam_native_to_bam" name="Convert BAM native to BAM" version="1.0.0" hidden="true">
<tool id="CONVERTER_bam_native_to_bam" name="Convert BAM native to BAM" version="1.0.0" hidden="true" profile="18.01">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="1.6">samtools</requirement>
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2 changes: 1 addition & 1 deletion lib/galaxy/datatypes/converters/sam_to_bam_native.xml
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<tool id="CONVERTER_sam_to_bam_native" name="Convert SAM to BAM native - without sorting" version="1.0.0">
<tool id="CONVERTER_sam_to_bam_native" name="Convert SAM to BAM native - without sorting" version="1.0.0" profile="18.01">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="1.6">samtools</requirement>
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