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Spell check 18.01 release notes and small tweaks.
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jmchilton committed Mar 9, 2018
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48 changes: 22 additions & 26 deletions doc/source/releases/18.01.rst
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ Enhancements
`cloudbridge <https://github.com/gvlproject/cloudbridge>`__
(thanks to `@VJalili <https://github.com/VJalili>`__).
`Pull Request 4487`_
* Reload tools immediatelly if a macro changes
* Reload tools immediately if a macro changes
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4635`_
* Add an interactive environment for `AskOmics <https://github.com/askomics/askomics>`__
Expand Down Expand Up @@ -205,14 +205,14 @@ Enhancements
`Pull Request 4876`_
* Update various Galaxy requirements.
`Pull Request 4884`_
* Updates and enhancements for the testing Dockerfile.
* Updates and enhancements for the testing ``Dockerfile``.
`Pull Request 4885`_, `Pull Request 4879`_, `Pull Request 4900`_
* Add nicer composite dataset names by default
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4886`_
* Improved initialization and isolation of postgres databases used in integration testing.
* Improved initialization and isolation of Postgres databases used in integration testing.
`Pull Request 4887`_, `Pull Request 4914`_
* Rework dev depenedencies to be Pipfile generated, locked, and hashed.
* Rework dev dependencies to be Pipfile generated, locked, and hashed.
`Pull Request 4891`_
* Install dev and regular dependencies at the same time.
`Pull Request 4903`_
Expand Down Expand Up @@ -270,7 +270,7 @@ Enhancements
* Remove wchartype dependency and ``is_multi_byte`` attribute
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5062`_
* Implement Multilingualization support on workflow page
* Implement multilingualization support on workflow page
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
`Pull Request 5077`_
* Remove wchartype dependency and is_multi_byte [2/2]
Expand Down Expand Up @@ -326,7 +326,7 @@ Enhancements
* Allow sorting collection elements based on file
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5273`_
* Add biostar configuration options to the configuration sample file.
* Add Biostar configuration options to the configuration sample file.
`Pull Request 5276`_
* Update Japanese translation
(thanks to `@istevenshen <https://github.com/istevenshen>`__).
Expand Down Expand Up @@ -391,12 +391,12 @@ Enhancements
`Pull Request 5206`_
* Refactor ``upload.py`` toward reuse.
`Pull Request 5229`_
* javascript router cleanup
* JavaScript router cleanup.
`Pull Request 5235`_
* Comment PlantTribes datatypes
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 5254`_
* Dataset Error Interface Cleanup
* Dataset error interface cleanup.
`Pull Request 5279`_
* Mention how to specify the config file location
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
Expand Down Expand Up @@ -463,14 +463,14 @@ Fixes
* Fix revision selection during (beta) repository installation
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4944`_
* Fix trackster styles bleeding into the app (the slightly offcenter upload
.icon buttons)
* Fix Trackster styles bleeding into the app (the slightly off-center upload
.icon buttons).
`Pull Request 4948`_
* Fix multiple selections for grid operations redirecting to center panel
* Fix multiple selections for grid operations redirecting to center panel.
`Pull Request 4951`_
* Fix visualization link in import success message
* Fix visualization link in import success message.
`Pull Request 4952`_
* Fix up reports javascript
* Fix up reports JavaScript.
`Pull Request 4967`_
* Run `hg clone` in a subprocess instead of using Mercurial API
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
Expand Down Expand Up @@ -500,7 +500,7 @@ Fixes
`Pull Request 5000`_
* Use github instead of NCBI for problematic data manager test FASTA.
`Pull Request 5007`_
* Fix for history contents api to remove the default flag override.
* Fix for history contents API to remove the default flag override.
`Pull Request 5008`_
* Fix to avoid visiting child inputs of invalid conditionals.
`Pull Request 5010`_
Expand Down Expand Up @@ -547,7 +547,7 @@ Fixes
* Toolshed install stability improvements
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5099`_
* Fix trackster link to custom builds view.
* Fix Trackster link to custom builds view.
`Pull Request 5104`_
* Improve resilience of filter detection, add error messages, fix identifiers.
`Pull Request 5106`_
Expand Down Expand Up @@ -579,7 +579,7 @@ Fixes
* Remove broken Yahoo OpenID support
(thanks to `@VJalili <https://github.com/VJalili>`__).
`Pull Request 5208`_
* Force window jquery access for charts.
* Force window jQuery access for charts.
`Pull Request 5210`_
* Mark transiently failing ``test_run_data`` as flakey.
`Pull Request 5211`_
Expand All @@ -592,8 +592,7 @@ Fixes
* paster.pid/log to galaxy.pid/log reference update
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5226`_
* `#5187 <https://github.com/galaxyproject/galaxy/issues/5187>`__: altered
conda version number for using '--offline' option again
* Refine Conda version numbers allowed for using ``--offline`` flag again
(thanks to `@NCEichner <https://github.com/NCEichner>`__).
`Pull Request 5233`_
* Workflow list show-in-tool-panel callback bugfix.
Expand All @@ -617,14 +616,13 @@ Fixes
`Pull Request 5286`_
* Fix dataset edit link.
`Pull Request 5289`_
* `#5291 <https://github.com/galaxyproject/galaxy/issues/5291>`__ fix link to
HTTP getgalaxy.org
* Fix link to getgalaxy.org
(thanks to `@selten <https://github.com/selten>`__).
`Pull Request 5295`_
* Fix tool report submission with sentry
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5303`_
* Fix common_startup.sh bashisms
* Fix common_startup.sh bash-isms
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5304`_
* Fix Galaxy instance startup error
Expand Down Expand Up @@ -674,13 +672,13 @@ Fixes
`Pull Request 5377`_
* Force a fixed node image version when building client for Jenkins.
`Pull Request 5382`_
* Install latest conda and don't use ``shell=True``
* Install latest Conda and don't use ``shell=True``
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5397`_
* Fix for subworkflow creation
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5398`_
* Follow IUC and drop r channel from default conda channels
* Follow IUC and drop r channel from default Conda channels
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5406`_
* Implement workaround for extra metadata revision creation.
Expand All @@ -701,7 +699,7 @@ Fixes
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5491`_
* Close ``tempfile`` handles.
`Pull Request 5506`_
`Pull Request 5506`_, `Pull Request 5552`_
* Do not allow ``codefiles`` during tool shed tool loading.
`Pull Request 5510`_
* Fix for GenomeSpace importer/exporter
Expand All @@ -710,8 +708,6 @@ Fixes
* Fix search overlay JS errors
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 5531`_
* Close tempfile handles.
`Pull Request 5552`_
* Allow LDAP options not starting with OPT_
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 5556`_
Expand Down

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