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Remove unnecessary variable and assignment of job command
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einonm committed Jan 29, 2016
1 parent 670a5f2 commit 7ebc3eb
Showing 1 changed file with 13 additions and 14 deletions.
27 changes: 13 additions & 14 deletions lib/galaxy/jobs/__init__.py
Expand Up @@ -1598,20 +1598,19 @@ def setup_external_metadata( self, exec_dir=None, tmp_dir=None,
config_file = self.app.config.config_file
if datatypes_config is None:
datatypes_config = self.app.datatypes_registry.integrated_datatypes_configs
base_command = self.external_output_metadata.setup_external_metadata( [ output_dataset_assoc.dataset for
output_dataset_assoc in
job.output_datasets + job.output_library_datasets ],
self.sa_session,
exec_dir=exec_dir,
tmp_dir=tmp_dir,
dataset_files_path=dataset_files_path,
config_root=config_root,
config_file=config_file,
datatypes_config=datatypes_config,
job_metadata=os.path.join( self.working_directory, TOOL_PROVIDED_JOB_METADATA_FILE ),
max_metadata_value_size=self.app.config.max_metadata_value_size,
**kwds )
command = base_command
command = self.external_output_metadata.setup_external_metadata( [ output_dataset_assoc.dataset for
output_dataset_assoc in
job.output_datasets + job.output_library_datasets ],
self.sa_session,
exec_dir=exec_dir,
tmp_dir=tmp_dir,
dataset_files_path=dataset_files_path,
config_root=config_root,
config_file=config_file,
datatypes_config=datatypes_config,
job_metadata=os.path.join( self.working_directory, TOOL_PROVIDED_JOB_METADATA_FILE ),
max_metadata_value_size=self.app.config.max_metadata_value_size,
**kwds )
if resolve_metadata_dependencies:
metadata_tool = self.app.toolbox.get_tool("__SET_METADATA__")
dependency_shell_commands = metadata_tool.build_dependency_shell_commands(job_directory=self.working_directory)
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