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more work on RN
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martenson committed Oct 16, 2017
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70 changes: 31 additions & 39 deletions doc/source/releases/17.09.rst
Expand Up @@ -29,24 +29,13 @@ Enhancements
* Add entry for empty_extra_files_path validator
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 3994`_
* Add possibility for downloading entire collections
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4098`_
* Implement Singularity Support
`Pull Request 4175`_
* Async update: support to collections
(thanks to `@fabio-cumbo <https://github.com/fabio-cumbo>`__).
`Pull Request 4198`_
* Add API repository uninstall endpoint
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4248`_
* Vcf gz datatype
(thanks to `@ffinfo <https://github.com/ffinfo>`__).
`Pull Request 4254`_
* Add ptkscmp datatype
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 4259`_
* Library tags
* Data Library tags support
(thanks to `@bwlang <https://github.com/bwlang>`__).
`Pull Request 4262`_
* Display preview feature for Bam datatype
Expand All @@ -61,54 +50,62 @@ Enhancements
* Paramiko based shell runner
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4358`_
* Add imzML datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4370`_
* Allow switching tool versions in workflow editor
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4373`_
* Stop loading tools that require a newer galaxy
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4382`_
* Vcf gz datatype
(thanks to `@ffinfo <https://github.com/ffinfo>`__).
`Pull Request 4254`_
* Add ptkscmp datatype
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 4259`_
* Add imzML datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4370`_
* Add deepTools datatypes to Galaxy
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4392`_
* Add support for the MEME psp format
(thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
`Pull Request 4430`_
* Nicer tool click targets for base + "plain" theme
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4470`_
* A round of data libraries improvements.
`Pull Request 4512`_
* add biom2 datatype
(thanks to `@shiltemann <https://github.com/shiltemann>`__).
`Pull Request 4519`_
* respect expose_user_email configuration in datalibraries permissions list
`Pull Request 4611`_
* Explicitly include PyPI as an --extra-index-url to pip
`Pull Request 4674`_
* Add Excel97 Datatype
`Pull Request 4410`_
* add mz5 datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4466`_

.. enhancement
* Configuration & Server Overhaul - Tool Shed and Reports
`Pull Request 3179`_
* Speed up and optimize the process of identifying public libraries.
`Pull Request 4640`_
* A round of data libraries improvements.
`Pull Request 4512`_
* Install tools and workflow
(thanks to `@manabuishii <https://github.com/manabuishii>`__).
`Pull Request 3064`_
* GFF3 support in filter by attribute
(thanks to `@peterjc <https://github.com/peterjc>`__).
`Pull Request 3076`_
* Configuration & Server Overhaul - Tool Shed and Reports
`Pull Request 3179`_
* Add extension point for user preferences
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 3383`_
* respect expose_user_email configuration in datalibraries permissions list
`Pull Request 4611`_
* Explicitly include PyPI as an --extra-index-url to pip
`Pull Request 4674`_
* Kubernetes runner: Non-privileged filesystem access, updated k8s Job version
(thanks to `@phnmnl <https://github.com/phnmnl>`__).
`Pull Request 3972`_
* Nicer tool click targets for base + "plain" theme
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4470`_
* Setup framework for retrying failed Selenium tests.
`Pull Request 3993`_
* add dev requirement
`Pull Request 4008`_
* Tool-Describing-Tours
(thanks to `@anatskiy <https://github.com/anatskiy>`__).
`Pull Request 4019`_
Expand Down Expand Up @@ -179,6 +176,8 @@ Enhancements
`Pull Request 4200`_
* Remove makos for published list grids
`Pull Request 4201`_
* add dev requirement
`Pull Request 4008`_
* Improve search plugin
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4213`_
Expand Down Expand Up @@ -310,8 +309,6 @@ Enhancements
* Update conda channel order to sync with Bioconda
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 4409`_
* Add Excel97 Datatype
`Pull Request 4410`_
* replace mako templates for tool lineage and quotas grids
`Pull Request 4411`_
* Fixes and enhancements for the upload API
Expand Down Expand Up @@ -347,9 +344,6 @@ Enhancements
* Fix checking WorkflowInvocation for published workflows
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4465`_
* add mz5 datatype
(thanks to `@bgruening <https://github.com/bgruening>`__).
`Pull Request 4466`_
* More items per page in saved history and directly show tags
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4467`_
Expand Down Expand Up @@ -566,8 +560,6 @@ Enhancements
`Pull Request 4630`_
* disable MacOS CI on travis
`Pull Request 4631`_
* optimize the process of identifying public libraries
`Pull Request 4640`_
* Custom Builds tests
(thanks to `@anatskiy <https://github.com/anatskiy>`__).
`Pull Request 4641`_
Expand Down Expand Up @@ -806,7 +798,7 @@ Fixes
`Pull Request 4742`_
* Fix joiner tool to inherit datatype from the input format
`Pull Request 4745`_
* Fix auth with ldaps://
* Fix auth with ``ldaps://``
(thanks to `@abretaud <https://github.com/abretaud>`__).
`Pull Request 4748`_
* Force onload webhooks to wait for Galaxy object (and root) resolution.
Expand Down
14 changes: 8 additions & 6 deletions doc/source/releases/17.09_announce.rst
Expand Up @@ -8,14 +8,16 @@ September 2017 Galaxy Release (v 17.09)
Highlights
===========================================================

**Feature1**
Feature description.
**Singularity**
<awesome_description_placeholder> `Pull Request 4175`_

**Feature2**
Feature description.
**Download entire collection**
Downloading whole colections is now possible from the history interface. `Pull Request 4098`_
Thanks to `@mvdbeek <https://github.com/mvdbeek>`__.

**Feature3**
Feature description.
**Switch tool versions in workflows**
You can now select exactly what version of tool you want to use when building workflows. `Pull Request 4373`_
Thanks to `@mvdbeek <https://github.com/mvdbeek>`__.

Get Galaxy
==========
Expand Down

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