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Update job_conf.xml.sample_advanced
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varunshankar committed Aug 2, 2016
1 parent 0e79c82 commit a6d3c54
Showing 1 changed file with 1 addition and 29 deletions.
30 changes: 1 addition & 29 deletions config/job_conf.xml.sample_advanced
Original file line number Diff line number Diff line change
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zero (no execution) and the stderr/stdout of the k8s job is reported in galaxy (and the galaxy job set
to failed) -->
</plugin>
<plugin id="godocker" type="runner" load="galaxy.jobs.runners.godocker:GodockerJobRunner">
<!-- REST based runner , submits jobs to godocker -->
<param id="godocker_master">GODOCKER_URL</param>
<!-- Specify the instance of GoDocker -->
<param id="user">USERNAME</param>
<!-- GoDocker username -->
<param id="key">APIKEY</param>
<!-- GoDocker API key -->
<param id="godocker_project">galaxy</param>
<!-- Specify the project present in the GoDocker setup -->
</plugin>

</plugins>
<handlers default="handlers">
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internally by the runner. -->
<param id="docker_enabled">true</param>
</destination>
<destination id="god" runner="godocker">
<!-- The following are configurations for the container -->
<param id="docker_enabled">true</param>
<param id="docker_cpu">1</param>
<param id="docker_memory">2</param>
<param id="docker_default_container_id">centos:latest</param>
<!-- Specify the image on which the jobs have to be executed -->
<param id="godocker_volumes"></param>
<!-- Mount the godocker volumes
volumes must be separated by commas.
eg: <param id="godocker_volumes">home,galaxy</param>
-->
<param id="virtualenv">false</param>
<!-- If a tool execution in container requires galaxy virtualenv,
then enable it by setting the value to true.
Disable venv by setting the value to false.
-->
</destination>


<!-- Templatized destinations - macros can be used to create templated
destinations with reduced XML duplication. Here we are creating 4 destinations in 4 lines instead of 28 using the macros defined below.
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