Update dependencies

using `make update-dependencies`.

lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt

@@ -2,16 +2,16 @@
 --extra-index-url https://pypi.python.org/simple
 alabaster==0.7.11
 argh==0.26.2
-atomicwrites==1.1.5
-attrs==18.1.0
+atomicwrites==1.2.1; python_version != '3.3.*'
+attrs==18.2.0
 babel==2.6.0
-certifi==2018.8.13
+certifi==2018.8.24
 chardet==3.0.4
 commonmark==0.5.4
 docutils==0.14
 funcsigs==1.0.2; python_version < '3.3'
 idna==2.7
-imagesize==1.0.0
+imagesize==1.1.0; python_version != '3.3.*'
 jinja2==2.10
 lxml==4.2.4
 markupsafe==1.0
@@ -25,14 +25,14 @@ pathlib2==2.3.2; python_version < '3.6'
 pathtools==0.1.2
 pbr==4.2.0
 pluggy==0.7.1; python_version != '3.3.*'
-py==1.5.4; python_version != '3.3.*'
+py==1.6.0; python_version != '3.3.*'
 pygithub3==0.5.1; python_version < '3'
 pygments==2.2.0
 pyparsing==2.2.0
 pytest-html==1.19.0
 pytest-metadata==1.7.0
-pytest-pythonpath==0.7.2
-pytest==3.7.2
+pytest-pythonpath==0.7.3
+pytest==3.8.0
 pytz==2018.5
 pyyaml==3.13
 recommonmark==0.4.0
@@ -44,8 +44,8 @@ snowballstemmer==1.2.1
 sphinx-rtd-theme==0.4.1
 sphinx==1.6.7
 sphinxcontrib-websupport==1.1.0; python_version != '3.3.*'
-testfixtures==6.2.0
+testfixtures==6.3.0
 twill==0.9.1; python_version < '3'
-typing==3.6.4; python_version < '3.5'
+typing==3.6.6; python_version < '3.5'
 urllib3==1.23; python_version >= '2.6'
-watchdog==0.8.3
+watchdog==0.9.0

lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt

@@ -1,26 +1,42 @@
 -i https://wheels.galaxyproject.org/simple
 --extra-index-url https://pypi.python.org/simple
+adal==1.1.0
 amqp==2.3.2
 appdirs==1.4.3
 asn1crypto==0.24.0
+azure-common==1.1.14
+azure-cosmosdb-nspkg==2.0.2
+azure-cosmosdb-table==1.0.4
+azure-mgmt-compute==4.0.1
+azure-mgmt-devtestlabs==2.2.0
+azure-mgmt-network==2.1.0
+azure-mgmt-nspkg==2.0.0
+azure-mgmt-resource==2.0.0
+azure-mgmt-storage==2.0.0
+azure-nspkg==2.0.0
+azure-storage-blob==1.3.1
+azure-storage-common==1.3.0
+azure-storage-nspkg==3.0.0
 babel==2.6.0
 bagit==1.6.4
 bcrypt==3.1.4
 bdbag==1.4.1
 beaker==1.10.0
 bioblend==0.11.0
 bleach==2.1.4
-boltons==18.0.0
+boltons==18.0.1
+boto3==1.7.84
 boto==2.46.1
+botocore==1.10.84
 bunch==1.0.1
 bx-python==0.8.2
 bz2file==0.98; python_version < '3.3'
-certifi==2018.8.13
+certifi==2018.8.24
 cffi==1.11.5
 chardet==3.0.4
 cheetah3==3.1.0
 cliff==2.13.0; python_version >= '2.6'
-cloudbridge==0.3.3
+cloudbridge==1.0.1
 cmd2==0.8.9
 contextlib2==0.5.5; python_version < '3.5'
 cryptography==2.3.1
@@ -43,6 +59,7 @@ html5lib==1.0.1
 idna==2.7
 ipaddress==1.0.22; python_version < '3.3'
 iso8601==0.1.12
+isodate==0.6.0
 jmespath==0.9.3
 jsonpatch==1.23; python_version != '3.3.*'
 jsonpointer==2.0; python_version != '3.3.*'
@@ -52,65 +69,69 @@ kombu==4.2.1
 mako==1.0.7
 markupsafe==1.0
 mercurial==3.7.3; python_version < '3'
-monotonic==1.5
+monotonic==1.5; python_version == '2.7'
 msgpack==0.5.6
+msrest==0.5.5
+msrestazure==0.5.0
 munch==2.3.2
 netaddr==0.7.19
 netifaces==0.10.7
 nose==1.3.7
 numpy==1.15.1
 oauthlib==2.1.0
-openstacksdk==0.17.2
+openstacksdk==0.17.0
 os-client-config==1.31.2
 os-service-types==1.3.0
 osc-lib==1.11.1
 oslo.config==6.4.0
+oslo.context==2.21.0
 oslo.i18n==3.21.0
+oslo.log==3.39.0
 oslo.serialization==2.27.0; python_version != '3.3.*'
-oslo.utils==3.36.4; python_version != '3.3.*'
+oslo.utils==3.37.0; python_version != '3.3.*'
 packaging==17.1
 paramiko==2.4.1
 parsley==1.3
 paste==2.0.3
 pastedeploy==1.5.2
 pastescript==2.0.2
 pbr==4.2.0
-positional==1.2.1
 prettytable==0.7.2
 psutil==5.4.7
 pulsar-galaxy-lib==0.8.3
-py2-ipaddress==3.4.1; python_version < '3'
 pyasn1==0.4.4
 pycparser==2.18
 pycryptodome==3.6.6
 pycryptodomex==3.6.6
+pyinotify==0.9.6; sys_platform != 'sunos5'
 pyjwkest==1.4.0
 pyjwt==1.6.4
 pykwalify==1.6.1
 pynacl==1.2.1
+pyopenssl==18.0.0
 pyparsing==2.2.0
 pyperclip==1.6.4
 pysam==0.14.1
-python-cinderclient==2.0.1
-python-dateutil==2.7.3
-python-genomespaceclient==1.0.0
-python-glanceclient==2.6.0; python_version != '3.3.*'
-python-keystoneclient==3.10.0; python_version != '3.3.*'
-python-lzo==1.12
-python-neutronclient==6.1.0
-python-novaclient==7.0.0
+pysftp==0.2.9
+python-cinderclient==4.0.0
+python-dateutil==2.7.3; python_version >= '2.7'
+python-genomespaceclient==1.1.0
+python-glanceclient==2.12.0
+python-keystoneclient==3.17.0
+python-neutronclient==6.9.0
+python-novaclient==11.0.0
 python-openid==2.2.5
-python-swiftclient==3.3.0
+python-swiftclient==3.6.0
 pytz==2018.5
 pyyaml==3.13
 repoze.lru==0.7
 requests-oauthlib==1.0.0
 requests-toolbelt==0.8.0
 requests==2.19.1
 requestsexceptions==1.4.0
-retrying==1.3.3
 rfc3986==1.1.0
 routes==2.4.1
+s3transfer==0.1.13
 simplejson==3.16.0
 six==1.11.0
 social-auth-core==1.5.0
@@ -122,12 +143,14 @@ stevedore==1.29.0
 subprocess32==3.5.2; python_version < '3.0'
 svgwrite==1.1.12
 tempita==0.5.2
+tenacity==4.12.0; python_version >= '2.6'
+typing==3.6.6; python_version < '3.5'
 tzlocal==1.5.1
 unicodecsv==0.14.1; python_version < '3.0'
 urllib3==1.23; python_version >= '2.6'
 uwsgi==2.0.17.1
 vine==1.1.4
-warlock==1.2.0; python_version != '3.3.*'
+warlock==1.3.0; python_version != '3.3.*'
 wcwidth==0.1.7; sys_platform != 'win32'
 webencodings==0.5.1
 webob==1.8.2; python_version != '3.2.*'