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Upgraded genomespaceclient to newer version
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This fixes issue reported in: galaxyproject/usegalaxy-playbook#100
Also related to PR: #6660
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nuwang committed Sep 4, 2018
1 parent bc1526a commit c867c68
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Showing 3 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion lib/galaxy/dependencies/pipfiles/default/Pipfile
Expand Up @@ -69,7 +69,7 @@ svgwrite = "*"
pyparsing = "*"
"Fabric3" = "*"
paramiko = "*"
python-genomespaceclient = "<1.0"
python-genomespaceclient = "<2.0"
social_auth_core = {version = "==1.5.0", extras = ['openidconnect']}

[requires]
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Expand Up @@ -93,7 +93,7 @@ pyperclip==1.6.4
pysam==0.14.1
python-cinderclient==2.0.1
python-dateutil==2.7.3
python-genomespaceclient==0.2
python-genomespaceclient==1.0.0
python-glanceclient==2.6.0; python_version != '3.3.*'
python-keystoneclient==3.10.0; python_version != '3.3.*'
python-lzo==1.12
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2 changes: 1 addition & 1 deletion tools/genomespace/genomespace_importer.py
Expand Up @@ -148,7 +148,7 @@ def determine_file_type(input_url, output_filename, metadata, json_params, sniff
Determine the Galaxy data format for this file.
"""
# Use genomespace metadata to map type
file_format = metadata.dataFormat.name if metadata.dataFormat else None
file_format = metadata.data_format.name if metadata.data_format else None
file_type = get_galaxy_ext_from_genomespace_format(file_format)

# If genomespace metadata has no identifiable format, attempt to sniff type
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