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Condense many 18.01 release bullets, expand a few.
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jmchilton committed Mar 9, 2018
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67 changes: 20 additions & 47 deletions doc/source/releases/18.01.rst
Original file line number Diff line number Diff line change
Expand Up @@ -100,46 +100,43 @@ Enhancements
samtools on Galaxy's ``PATH`` (with huge help from `@mvdbeek
<https://github.com/mvdbeek>`__)
`Pull Request 4497`_, `Pull Request 5512`_, `Pull Request 5037`_
* Initial selenium tests for libraries.
`Pull Request 4543`_
* Expand and improve Selenium testing of the web UI (with help from
`@anatskiy <https://github.com/anatskiy>`__).
`Pull Request 4543`_, `Pull Request 4655`_, `Pull Request 4676`_,
`Pull Request 4753`_, `Pull Request 4732`_, `Pull Request 4909`_,
`Pull Request 4935`_, `Pull Request 4925`_,
`Pull Request 4687`_, `Pull Request 4660`_, `Pull Request 5333`_,
`Pull Request 5068`_, `Pull Request 4757`_
* Allow multiple simultaneous uploads via single POST.
`Pull Request 4563`_
* Various bits of hardening
* Various bits of proactive security-related hardening
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4604`_
* Aggressively retry buggy submit_login() function in Selenium tests.
`Pull Request 4655`_
* Move wait_for_dataset_collection to populators
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4658`_
* Extend job search for hdcas
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4665`_
* Add a custom "TRACE" log level for even more verbosity.
`Pull Request 4672`_
* Another round of small Selenium fixes.
`Pull Request 4676`_
* Remove history renaming mako
`Pull Request 4681`_
* Migrate various mako templates to modern JavaScript driven views.
`Pull Request 4681`_, `Pull Request 4682`_, `Pull Request 4711`_,
`Pull Request 4755`_, `Pull Request 4661`_
* More HDCA copying tests, add option to copy HDAs into new history.
`Pull Request 5004`_
* Remove visualization edit form mako
`Pull Request 4682`_
* Use only latest publication
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 4688`_
* Nicer logging message for sentry
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4693`_
* Fix import order for cron/, scripts/ and test/
* Fix Python import order for ``cron/``, ``scripts/``, and ``test/``
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 4697`_
* Use enumeration to provide history input index names
* Use enumeration to provide history input index names.
`Pull Request 4700`_
* Cleanup delayed action in history-view.js.
* Cleanup delayed action in ``history-view.js``.
`Pull Request 4704`_
* Removes the history permissions form mako
`Pull Request 4711`_
* Add logging during for script integrity exceptions
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4720`_
Expand All @@ -154,8 +151,6 @@ Enhancements
* Stricter checks for SDF sniffing
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 4729`_
* Selenium Overhaul
`Pull Request 4732`_
* Reuse existing dependency manager if possible
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4739`_
Expand All @@ -164,10 +159,6 @@ Enhancements
* Kubernetes resources requests/limits support
(thanks to `@phnmnl <https://github.com/phnmnl>`__).
`Pull Request 4751`_
* Another Round of Selenium Fixes and Improvements
`Pull Request 4753`_
* Replace admin toolshed repository grid mako
`Pull Request 4755`_
* Additionally send all stats to a single bucket
(thanks to `@erasche <https://github.com/erasche>`__).
`Pull Request 4758`_
Expand Down Expand Up @@ -222,22 +213,15 @@ Enhancements
`Pull Request 4900`_
* Install dev and regular dependencies at the same time.
`Pull Request 4903`_
* Selenium test for Tool-Describing-Tours
(thanks to `@anatskiy <https://github.com/anatskiy>`__).
`Pull Request 4909`_
* More structured app shutdown.
`Pull Request 4910`_
* Touch up issue labels.
`Pull Request 4912`_
* Improve error handling for incorrect datatype upload.
`Pull Request 4922`_
* Lighter weight Selenium test setup for PRs.
`Pull Request 4925`_
* Fix downloading of arbitrarily-nested collections
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4934`_
* Enable Galaxy client logging during Selenium tests.
`Pull Request 4935`_
* Activate mulled dependencies once per job
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 4945`_
Expand Down Expand Up @@ -300,8 +284,6 @@ Enhancements
`Pull Request 5063`_
* Improved Karma configuration and options.
`Pull Request 5066`_
* Selenium test for tool citations.
`Pull Request 5068`_
* More QUnit Fixes and Enhancements
`Pull Request 5074`_
* Implement Multilingualization support on workflow page
Expand Down Expand Up @@ -447,8 +429,6 @@ Enhancements
`Pull Request 4526`_
* Remove unused abstraction layers from Visualizations Registry
`Pull Request 4620`_
* Remove unused export base mako
`Pull Request 4661`_
* More unused template cleanup
`Pull Request 4664`_
* Visible keys standardization
Expand Down Expand Up @@ -507,8 +487,7 @@ Enhancements
`Pull Request 5297`_
* Uninstall a tool by default (vs. deactivating it)
`Pull Request 5300`_
* Move the client build for selenium to in-repo script
`Pull Request 5333`_



Fixes
Expand All @@ -526,8 +505,6 @@ Fixes
`Pull Request 4645`_
* Improve robustness of published workflow display test case.
`Pull Request 4653`_
* Selenium fixes for publishing histories button.
`Pull Request 4660`_
* Pass job output file unqualified names to Pulsar so that it can create them
before running the job
`Pull Request 4662`_
Expand All @@ -536,10 +513,6 @@ Fixes
* Update CITATION file with 2016 paper
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 4686`_
* Ever more Selenium fixes.
`Pull Request 4687`_
* Run Selenium tests as external user.
`Pull Request 4757`_
* Stop running common_startup.sh twice when starting from run.sh
`Pull Request 4759`_
* Fix docstring linting.
Expand Down Expand Up @@ -691,21 +664,21 @@ Fixes
`Pull Request 5172`_
* Remove legacy request controller from reports app
`Pull Request 5182`_
* Don't clone subworkflows
* Don't clone subworkflows.
(thanks to `@anatskiy <https://github.com/anatskiy>`__).
`Pull Request 5185`_
* Fixes genome decode handling.
`Pull Request 5198`_
* Sample tracking removal cleanup
`Pull Request 5204`_
* Removed Yahoo OpenID support
* Remove broken Yahoo OpenID support
(thanks to `@VJalili <https://github.com/VJalili>`__).
`Pull Request 5208`_
* Force window jquery access for charts
* Force window jquery access for charts.
`Pull Request 5210`_
* Mark transiently failing test_run_data as flakey.
* Mark transiently failing ``test_run_data`` as flakey.
`Pull Request 5211`_
* Fail job if tools that use galaxy.json write to stderr
* Fail job if tools that use ``galaxy.json`` write to stderr
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5217`_
* Allow shell plugins with different parameters to co-exist
Expand Down

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