New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Download files in a list of datasets with the name from the list #2023
Comments
This is basically a duplicate of #2140 and related to #2346. My general suggestion would be name the files according to the element identifiers in the collection. However, when downloading, prefix the names with the name of the collection to provide context. This would be made even better if one could easily rename the collection in a workflow. |
Okay - so currently the naming for downloaded datasets from the history panel when coming in through a collection is:
But it would be more usable if it was:
What about the HID of the collection - should that be included? (Currently the HID of the dataset is included - which is useless and really problematic that it even has an HID - see #1810). |
At the moment, I'm voting for |
Just wanted to comment on this. An important use case for us would be for the user to upload a collection of files, run some processing pipeline on them and download the result. We can preserve the element_identifier between processing steps, but then they can't download the resulting dataset. If they could, the filenames would have a useless (for us) prefix named for the dataset collection . Better would be to download this as a zip file with a directory structure, the directory could be the dataset name but the individual data files would be <element_identifier>.. Perhaps the addition of the prefix could be optional in a download dialogue? |
@stevecassidy Indeed - this would be great. Thanks for the input! |
…ollections. xref galaxyproject#1675 This is of limited utility since we don't really expose the name - and intentionally so. Related open bugs/enhancements that still need to be addressed are: - Applying rename to the collection (in addition to the elements) - galaxyproject#1680. - Download of collection elements with element identifier instead of the name: galaxyproject#2023 / galaxyproject#2140.
Closing as a duplicate of #2140. Opened an issue based on @stevecassidy's comment above with #3984. |
Idea:
Download files in a list of datasets with the name from the list (Samplexyz.bam) as output instead of the name given by galaxy (Galaxy5-[Filter_SAM_or_BAM,_output_SAM_or_BAM_on_data_181__bam]).
Submitted by:
markus.ball via https://biostar.usegalaxy.org/p/16676/
The text was updated successfully, but these errors were encountered: