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[23.0] AWS Batch python dependency bugfix #15869

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merged 1 commit into from
Mar 30, 2023

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@dannon dannon commented Mar 29, 2023

Disable galaxy virtual env for aws batch job runner. This was causing some containers to attempt to use galaxy's python dependencies which are unavailable to batch, instead of container-installed dependencies as appropriate. Thanks @jmchilton

How to test the changes?

(Select all options that apply)

  • I've included appropriate automated tests.
  • This is a refactoring of components with existing test coverage.
  • Instructions for manual testing are as follows:
    1. Try running a python tool that uses pandas

License

  • I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

… some containers to attempt to use galaxy's python dependencies which are unavailable to batch, instead of container-installed dependencies as appropriate
@dannon dannon marked this pull request as ready for review March 29, 2023 15:39
@dannon dannon closed this Mar 29, 2023
@dannon dannon reopened this Mar 29, 2023
@dannon dannon requested a review from guerler March 29, 2023 16:00
@mvdbeek mvdbeek merged commit 57cd5ac into galaxyproject:release_23.0 Mar 30, 2023
@galaxyproject galaxyproject deleted a comment from github-actions bot Mar 30, 2023
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3 participants