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Mothur datatypes: fix metadata failure for large count tables #3706

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merged 2 commits into from Mar 6, 2017
Merged

Mothur datatypes: fix metadata failure for large count tables #3706

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0914c05
fix metadata failure for large count tables
shiltemann Mar 3, 2017
fe41ec1
fix typos
shiltemann Mar 3, 2017
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6 changes: 4 additions & 2 deletions lib/galaxy/datatypes/mothur.py
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Expand Up @@ -270,7 +270,8 @@ def set_meta(self, dataset, overwrite=True, **kwd):
dataset.metadata.column_names = self.column_names
dataset.metadata.column_types = self.column_types
dataset.metadata.comment_lines = self.comment_lines
dataset.metadata.data_lines -= self.comment_lines
if isinstance(dataset.metadata.data_lines, int):
dataset.metadata.data_lines -= self.comment_lines


class AlignReport(Tabular):
Expand Down Expand Up @@ -735,7 +736,8 @@ def set_meta(self, dataset, overwrite=True, skip=1, max_data_lines=None, **kwd):
dataset.metadata.groups = colnames[2:]

dataset.metadata.comment_lines = 1
dataset.metadata.data_lines -= 1
if isinstance(dataset.metadata.data_lines, int):
dataset.metadata.data_lines -= 1


class RefTaxonomy(Tabular):
Expand Down