Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mothur.freq sniffer more stringent #4781

Merged
merged 4 commits into from Oct 12, 2017

Conversation

yhoogstrate
Copy link
Member

@galaxybot galaxybot added this to the 18.01 milestone Oct 10, 2017
Copy link
Member

@nsoranzo nsoranzo left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I also independently found the error at line 615, good catch!

@@ -582,6 +582,7 @@ def sniff(self, filename):

class Frequency(Tabular):
file_ext = 'mothur.freq'
max_snif_lines = 25
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

You don't need to re-implement this, there's already a count parameter for iter_headers(), which by default is 60 lines.

@jmchilton jmchilton merged commit 5bf08cf into galaxyproject:dev Oct 12, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

4 participants