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Fix job wrapper fail for queued jobs #8179

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merged 4 commits into from Jun 19, 2019

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@mvdbeek mvdbeek commented Jun 18, 2019

whose input datasets are purged. The error only occurs if outputs_to_working_directory is set.

The new test then also revealed that we didn't properly pause jobs with inputs in error state (they'd just be ignored), which is fixed by 920925d

@galaxybot galaxybot added this to the 19.09 milestone Jun 18, 2019
To provoke galaxyproject#8171
run the tests with GALAXY_CONFIG_OUTPUTS_TO_WORKING_DIRECTORY=True
when `outputs_to_working_directory` is set.

Fixes galaxyproject#8171
This isn't needed when called by finish_job. Thanks Nicola!
@nsoranzo nsoranzo changed the title Fix job wrapper fail for queued jobs Fix job wrapper fail for queued jobs Jun 19, 2019
@nsoranzo nsoranzo merged commit 7e0c90b into galaxyproject:dev Jun 19, 2019
@nsoranzo nsoranzo deleted the fix_job_wrapper_fail branch June 19, 2019 13:48
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3 participants