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Allow existing dataset / dataset collection ids in jobs for planemo run #1080

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mvdbeek opened this issue Sep 14, 2020 · 8 comments · Fixed by galaxyproject/galaxy#10334
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Allow existing dataset / dataset collection ids in jobs for planemo run #1080

mvdbeek opened this issue Sep 14, 2020 · 8 comments · Fixed by galaxyproject/galaxy#10334
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@mvdbeek
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mvdbeek commented Sep 14, 2020

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@mvdbeek mvdbeek self-assigned this Sep 14, 2020
@simonbray
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Seems to be a similar issue to #1073

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mvdbeek commented Sep 14, 2020 •
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I guess.

@mvdbeek mvdbeek closed this as completed Sep 14, 2020
@simonbray
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@mvdbeek what time scale did you want to do this on? I was hoping to take a look at it in the next week or two.

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mvdbeek commented Sep 14, 2020

I'm gonna poke at it later today or tomorrow, I'll let you know how that's going.

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What I did so far was in this commit (5929da8), which allows executing a workflow using just the workflow ID rather than a local JSON/YAML file.

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@mvdbeek, just to let you know, I started to work on this here: galaxyproject/galaxy@dev...simonbray:staging-with-id

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mvdbeek commented Sep 29, 2020

Awesome, I've gloriously overestimated the time I have available 😅

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Haha no worries. I'll try and make a PR in the next couple of days.

@simonbray simonbray mentioned this issue Sep 30, 2020
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Allow 'planemo run' to stage in existing datasets without reuploading simonbray/galaxy
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@mvdbeek @simonbray