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Add "Methylation" to planemo shed_init categories #348

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nturaga opened this issue Oct 26, 2015 · 9 comments · Fixed by #351
Closed

Add "Methylation" to planemo shed_init categories #348

nturaga opened this issue Oct 26, 2015 · 9 comments · Fixed by #351

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@nturaga
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nturaga commented Oct 26, 2015

Methylation would be nice if it were added. More tools are coming up in that area now.

Error: Invalid value for "--category": invalid choice: Methylation. (choose from Assembly, ChIP-seq, Combinatorial Selections, Computational chemistry, Convert Formats, Data Managers, Data Source, Fasta Manipulation, Fastq Manipulation, Genome-Wide Association Study, Genomic Interval Operations, Graphics, Imaging, Metabolomics, Metagenomics, Micro-array Analysis, Next Gen Mappers, Ontology Manipulation, Phylogenetics, Proteomics, RNA, SAM, Sequence Analysis, Statistics, Systems Biology, Text Manipulation, Tool Dependency Packages, Tool Generators, Transcriptomics, Variant Analysis, Visualization, Web Services)

@martenson
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I think Planemo loads categories from MTS's API

@nturaga
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nturaga commented Oct 26, 2015

Then we can just add a category to the MTS API then. I'll get on that.

@martenson
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I can do that for you. Give me name and description.

@nturaga
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nturaga commented Oct 26, 2015

"Epigenetics" is a better category apparently according to Mike. That will encapsulate a bunch of tools in along with methylation.

@martenson
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And the description?

@nturaga
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nturaga commented Oct 26, 2015

"Tools for analyzing Epigenetic/Epigenomic datasets"

@bgruening
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@martenson Not sure about fetching the categories. See this one: https://github.com/galaxyproject/planemo/pull/285/files

@hexylena
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yep. they are hard coded in planemo.

@martenson
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It is hardcoded so it works offline I think. Nevertheless the category needs to go to TS first. Done.

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4 participants