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I'm admittedly not exactly in love with the command line options. I'd rather have a
--tool_test_output_formats
switch and be able to specify one or more of (html, text, markdown, xunit, json), and deprecate--tool_test_output{'', '_xunit', '_json', '_text', '_markdown')
but that would remove the nice ability to specify output file names.Should address @peterjc's issue #302.
Example Text
Example Markdown
Tool Test Results (powered by Planemo)
Executive Summary
Detailed Results
functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000000
Job Passed
functional.test_toolbox.TestForTool_seqtk_comp.test_tool_000001
Job Error! (State: failure)
Command Line:
seqtk comp /tmp/tmpe3FMDm/files/000/dataset_3.dat | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1' > /tmp/tmpe3FMDm/files/000/dataset_4.dat
exited with code 0.
Problems