bedtools mapBed.xml tool is invalid

[nsoranzo]

After latest push to the MTS, https://toolshed.g2.bx.psu.edu/view/iuc/bedtools/457b09031d57 reports that mapBed.xml is invalid:

This file requires an entry for "'input'" in the tool_data_table_conf.xml file. Upload a file named tool_data_table_conf.xml.sample to the repository that includes the required entry to correct this error.

which does not make much sense for me.

[nsoranzo]

Unfortunately PR #150 fixed mapBed.xml , but broke mergeBed.xml . From https://testtoolshed.g2.bx.psu.edu/repository?repository_id=7f940896abcf000c&changeset_revision=bdb4509d9482 :

This file requires an entry for "'inputA'" in the tool_data_table_conf.xml file. Upload a file named tool_data_table_conf.xml.sample to the repository that includes the required entry to correct this error.

[bgruening]

True, thanks for reporting. It seems that neither planemo l and planemo t catches these kind of errors.

[bgruening]

@nsoranzo next try #148
I have removed the macro and using yield now to manually adopt for the correct input value.

[nsoranzo]

@bgruening The commit LGTM, can you open a PR?

[bgruening]

@nsoranzo #161 Thanks for reviewing!

[nsoranzo]

Fixed by #161 and uploaded to the MTS.