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edgeR #1471

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merged 6 commits into from
Nov 7, 2017
Merged

edgeR #1471

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e209d0f
edgeR - first version
mblue9 Sep 11, 2017
dad9c1e
fixes from review
mblue9 Sep 12, 2017
7c3e0ba
fixes from feedback
mblue9 Sep 25, 2017
fd85bf6
modifications from review and other improvements
mblue9 Oct 3, 2017
d5b4d37
use conda-forge statmod 1.4.30
mblue9 Oct 4, 2017
9fa2530
edits from review
mblue9 Oct 23, 2017
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12 changes: 12 additions & 0 deletions tools/edger/.shed.yml
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categories:
- Transcriptomics
- RNA
- Statistics
description: Perform RNA-Seq differential expression analysis using edgeR pipeline
homepage_url: http://bioconductor.org/packages/release/bioc/html/edgeR.html
long_description: |
Apply edgeR pipeline on a table of tab separated count data to generate HTML report for differential expression analysis. Report includes BCV, MDS and smear plots as well as summarised table of statistics on each gene.
name: edger
owner: iuc
remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger
type: unrestricted
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