De novo transcriptome assembly, annotation, and differential expression analysis #1351
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@abretaud is this still in WIP? |
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It's still in progress. TODO :
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lecorguille
changed the title
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Can we consider to merge this PR? I promise to daily beat @r1corre to make him finish this tutorial 👿 |
bgruening
previously approved these changes
Feb 13, 2020
| @@ -540,6 +546,10 @@ workflow4metabolomics: | |||
| wm75: | |||
| name: Wolfgang Maier | |||
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| xiliu: | |||
| name: Xi Liu | |||
| github: false | |||
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can you remove this @lecorguille
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AH ... how can I add Xi as author?
shiltemann
approved these changes
Feb 13, 2020
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thanks @abretaud and @lecorguille! and good luck tomorrow! |
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Thanks! |
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hi, I am trying to run denovo transcriptome pipeline on usegalaxy.org, but the issue is I cant see Trinity in the assembly method. Can you please guide me through how to use it? Thanks |
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Finally a tutorial for de novo transcriptome assembly, annotation, and differential expression analysis as promised in #59 .
It's different than the existing de novo transcriptomics as here we don't use a reference genome, we just assemble the transcriptome using Trinity
We (with @r1corre) have a first draft of workflow, but a few things are missing:
Fixes #59