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Thank you for the suggestion, although both methods (what I initially ran and what you suggested) for me produce the same file where each line has the full path and the file name as such:
path/to/run_discoSnpRad.sh: line 553: /my/current/path../bin/read_file_names: No such file or directory
"there was a problem with readFileName Dumping"
I also tried putting the script in the directory with the files and just having a list of files without the full paths. This produced the same error.
I also tried running the simple_test.sh script and got the following error:
"there was a problem with graph construction$ reset
diff: discoRes_k_31_c_3_D_100_P_3_b_0_coherent.fa: No such file or directory
*** Test: FAILURE on diff .fa"
Best!
Coral
The text was updated successfully, but these errors were encountered:
clorenzo1
changed the title
error: there was a problem with readFileName
error: there was a problem with readFileName Dumping
Nov 29, 2022
Hi Pierre,
I am reopening this issue as it was not resolved.
Thank you for the suggestion, although both methods (what I initially ran and what you suggested) for me produce the same file where each line has the full path and the file name as such:
/my/current/path/file1.fasta
/my/current/path/file2.fasta
And I am still getting this error:
path/to/run_discoSnpRad.sh: line 553: /my/current/path../bin/read_file_names: No such file or directory
"there was a problem with readFileName Dumping"
I also tried putting the script in the directory with the files and just having a list of files without the full paths. This produced the same error.
I also tried running the simple_test.sh script and got the following error:
"there was a problem with graph construction$ reset
diff: discoRes_k_31_c_3_D_100_P_3_b_0_coherent.fa: No such file or directory
*** Test: FAILURE on diff .fa"
Best!
Coral
The text was updated successfully, but these errors were encountered: