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Guo-Bo Chen edited this page Dec 11, 2018 · 21 revisions

Welcome to the GEnetic Analysis Repository (GEAR) wiki!

GEAR is developed in Java, and requires java runtime environment 7 installed on a system.

The latest release of GEAR can be downloaded here.

Contact: Guo-Bo Chen, chenguobo@gmail.com


A quick tutorial for getting started


0. Data management options


1. EigenGWAS

CEU_TSI

Citation: Heredity, 2016, 117:51-61, {EigenGWAS paper download}


2. Variance component analysis for GWAS data

HE vs REML

Citations:

Front Genet, 2014, 5:107, {HE-IBS paper download}

Euro J Hum Genet, 2016, 24:1810-6, {HE structure paper download}


3. GWAS summary statistics

EuroMap

Citation:

Euro J Hum Genet, 2017, 25:137-146, {SumStat QC paper download}


4. Principal component analysis


5. Genomic profile risk score

Citation: Heredity, 2016, 117:51-61, {EigenGWAS paper download}


6. Open GWAS algoriTHm (OATH) for deep evaluation

Citations: G3, 2017, 7:943-952, {G3 paper download}


7. Population genetics


8. Data simulation


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