DNA Fingerprint

This function identifies identical individuals using SNP similarity.

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Master option: dfp

Options

--m Specify the number of markers for generating similarity scores between individuals. It defaults to 100 markers.

--low-cutoff/--l

Specify the lower bounder for similarity cutoff. Only the similarity score higher than the given cutoff will be printed out.

--high-cutoff/--h

Specify the upper bounder for similarity cutoff. Only the similarity score lower than the given cutoff will be printed out.

--extract

Specify a file that gives a list of SNPs for generating similarity scores.

--bfile2

If for finding overlapping samples between a pair of data, the second genotype file in the binary set should be specified.

Examples

gear dfp --bfile test --bfile2 test1 --m 100 --out tt
gear dfp --bfile test --bfile2 test1 --extract snplist.txt --out tt
gear dfp --bfile test --bfile2 test1 --h 0.95 --out tt 

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