Merge pull request #27219 from geneontology/update-design-patterns

Update design pattern docs

src/design_patterns/biosynthetic_process.tsv

@@ -122,6 +122,7 @@ http://purl.obolibrary.org/obo/GO_0070981	L-asparagine biosynthetic process	http
 http://purl.obolibrary.org/obo/GO_0062142	L-beta-ethynylserine biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_144729	L-beta-ethynylserine zwitterion
 http://purl.obolibrary.org/obo/GO_1903185	L-dopa biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_57504	L-dopa zwitterion
 http://purl.obolibrary.org/obo/GO_0006005	L-fucose biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_18287	L-fucose
+http://purl.obolibrary.org/obo/GO_0097054	L-glutamate biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_29985	L-glutamate(1-)
 http://purl.obolibrary.org/obo/GO_1901704	L-glutamine biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_58359	L-glutamine zwitterion
 http://purl.obolibrary.org/obo/GO_0071269	L-homocysteine biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_58199	L-homocysteine zwitterion
 http://purl.obolibrary.org/obo/GO_0046182	L-idonate biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_17796	L-idonate

src/design_patterns/metabolic_process.tsv

@@ -165,7 +165,6 @@ http://purl.obolibrary.org/obo/GO_0046439	L-cysteine metabolic process	http://pu
 http://purl.obolibrary.org/obo/GO_1903184	L-dopa metabolic process	http://purl.obolibrary.org/obo/CHEBI_57504	L-dopa zwitterion
 http://purl.obolibrary.org/obo/GO_0042354	L-fucose metabolic process	http://purl.obolibrary.org/obo/CHEBI_18287	L-fucose
 http://purl.obolibrary.org/obo/GO_0034193	L-galactonate metabolic process	http://purl.obolibrary.org/obo/CHEBI_53071	L-galactonate
-http://purl.obolibrary.org/obo/GO_0097054	L-glutamate biosynthetic process	http://purl.obolibrary.org/obo/CHEBI_29985	L-glutamate(1-)
 http://purl.obolibrary.org/obo/GO_0019523	L-idonate metabolic process	http://purl.obolibrary.org/obo/CHEBI_17796	L-idonate
 http://purl.obolibrary.org/obo/GO_0097052	L-kynurenine metabolic process	http://purl.obolibrary.org/obo/CHEBI_57959	L-kynurenine zwitterion
 http://purl.obolibrary.org/obo/GO_0046440	L-lysine metabolic process	http://purl.obolibrary.org/obo/CHEBI_32551	L-lysinium(1+)

src/design_patterns/protein_complex_by_activity.tsv

@@ -138,6 +138,7 @@ http://purl.obolibrary.org/obo/GO_0009325	nitrate reductase complex	http://purl.
 http://purl.obolibrary.org/obo/GO_1903958	nitric-oxide synthase complex	http://purl.obolibrary.org/obo/GO_0004517	nitric-oxide synthase activity
 http://purl.obolibrary.org/obo/GO_0005900	oncostatin-M receptor complex	http://purl.obolibrary.org/obo/GO_0004924	oncostatin-M receptor activity
 http://purl.obolibrary.org/obo/GO_1990204	oxidoreductase complex	http://purl.obolibrary.org/obo/GO_0016491	oxidoreductase activity
+http://purl.obolibrary.org/obo/GO_0160167	oxoadipate dehydrogenase complex	http://purl.obolibrary.org/obo/GO_0160166	2-oxoadipate dehydrogenase activity
 http://purl.obolibrary.org/obo/GO_0045252	oxoglutarate dehydrogenase complex	http://purl.obolibrary.org/obo/GO_0034602	oxoglutarate dehydrogenase (NAD+) activity
 http://purl.obolibrary.org/obo/GO_0002178	palmitoyltransferase complex	http://purl.obolibrary.org/obo/GO_0016409	palmitoyltransferase activity
 http://purl.obolibrary.org/obo/GO_1905368	peptidase complex	http://purl.obolibrary.org/obo/GO_0008233	peptidase activity
@@ -202,7 +203,7 @@ http://purl.obolibrary.org/obo/GO_0043527	tRNA methyltransferase complex	http://
 http://purl.obolibrary.org/obo/GO_1903768	taste receptor complex	http://purl.obolibrary.org/obo/GO_0008527	taste receptor activity
 http://purl.obolibrary.org/obo/GO_1990205	taurine dioxygenase complex	http://purl.obolibrary.org/obo/GO_0000908	taurine dioxygenase activity
 http://purl.obolibrary.org/obo/GO_1902507	thiazole synthase complex	http://purl.obolibrary.org/obo/GO_1990107	thiazole synthase activity
-http://purl.obolibrary.org/obo/GO_1902515	thioredoxin-disulfide reductase complex	http://purl.obolibrary.org/obo/GO_0004791	thioredoxin-disulfide reductase (NADP) activity
+http://purl.obolibrary.org/obo/GO_1902515	thioredoxin-disulfide reductase complex	http://purl.obolibrary.org/obo/GO_0004791	thioredoxin-disulfide reductase (NADPH) activity
 http://purl.obolibrary.org/obo/GO_0005667	transcription regulator complex	http://purl.obolibrary.org/obo/GO_0140110	transcription regulator activity
 http://purl.obolibrary.org/obo/GO_0017053	transcription repressor complex	http://purl.obolibrary.org/obo/GO_0001217	DNA-binding transcription repressor activity
 http://purl.obolibrary.org/obo/GO_0061695	transferase complex, transferring phosphorus-containing groups	http://purl.obolibrary.org/obo/GO_0016772	transferase activity, transferring phosphorus-containing groups

src/ontology/imports/go-pattern-conformance.ttl

@@ -36564,7 +36564,7 @@
 <http://purl.obolibrary.org/obo/GO_0097053> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/catabolic_process.yaml> .
 
 
-<http://purl.obolibrary.org/obo/GO_0097054> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/metabolic_process.yaml> .
+<http://purl.obolibrary.org/obo/GO_0097054> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/biosynthetic_process.yaml> .
 
 
 <http://purl.obolibrary.org/obo/GO_0097055> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/biosynthetic_process.yaml> .
@@ -39690,6 +39690,9 @@
 <http://purl.obolibrary.org/obo/GO_0160164> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/negative_regulation.yaml> .
 
 
+<http://purl.obolibrary.org/obo/GO_0160167> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/protein_complex_by_activity.yaml> .
+
+
 <http://purl.obolibrary.org/obo/GO_0170033> <http://purl.org/dc/terms/conformsTo> <http://purl.obolibrary.org/obo/go/patterns/metabolic_process.yaml> .