We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
38646a1
There was a problem hiding this comment.
The reason will be displayed to describe this comment to others. Learn more.
Here's a diff of how these changes impact the classified ontology:
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2023-10-04/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl
http://purl.obolibrary.org/obo/GO_1990966
ATP generation from poly-ADP-D-ribose EquivalentTo metabolic process and (has output some ATP(4-)) and (has primary input or output some poly-ADP-D-ribose)
ATP generation from poly-ADP-D-ribose SubClassOf has output some ATP(4-)
ATP generation from poly-ADP-D-ribose EquivalentTo metabolic process and (has primary input or output some poly-ADP-D-ribose) and (has primary output some ATP(4-))
ATP generation from poly-ADP-D-ribose SubClassOf has primary output some ATP(4-)
http://purl.obolibrary.org/obo/GO_0006238
CMP salvage EquivalentTo cellular metabolic compound salvage and (has output some cytidine 5'-monophosphate(2-))
CMP salvage SubClassOf has output some cytidine 5'-monophosphate(2-)
http://purl.obolibrary.org/obo/GO_0044211
CTP salvage EquivalentTo cellular metabolic compound salvage and (has output some CTP(4-))
CTP salvage SubClassOf has output some CTP(4-)
http://purl.obolibrary.org/obo/GO_0061678
Entner-Doudoroff pathway SubClassOf pyruvate metabolic process
Entner-Doudoroff pathway SubClassOf has primary output some pyruvate
http://purl.obolibrary.org/obo/GO_0009255
Entner-Doudoroff pathway through 6-phosphogluconate EquivalentTo Entner-Doudoroff pathway and (has part some phosphogluconate dehydratase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has output some pyruvate) and (has output some glyceraldehyde 3-phosphate(2-)) and (has intermediate some 6-phosphonatooxy-D-gluconate)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf has output some glyceraldehyde 3-phosphate(2-)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf small molecule metabolic process
Entner-Doudoroff pathway through 6-phosphogluconate EquivalentTo Entner-Doudoroff pathway and (has part some phosphogluconate dehydratase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has intermediate some 6-phosphonatooxy-D-gluconate) and (has primary output some pyruvate) and (has primary output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf glyceraldehyde-3-phosphate metabolic process
http://purl.obolibrary.org/obo/GO_0061679
http://purl.obolibrary.org/obo/GO_0061680
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde EquivalentTo Entner-Doudoroff pathway through gluconate and (ends with some 2-dehydro-3-deoxy-D-gluconate aldolase activity) and (has output some D-glyceraldehyde)
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf has output some D-glyceraldehyde
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde EquivalentTo Entner-Doudoroff pathway through gluconate and (ends with some 2-dehydro-3-deoxy-D-gluconate aldolase activity) and (has primary output some D-glyceraldehyde)
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf monosaccharide metabolic process
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf has primary output some D-glyceraldehyde
http://purl.obolibrary.org/obo/GO_0061681
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate EquivalentTo Entner-Doudoroff pathway through gluconate and (has part some 2-dehydro-3-deoxygluconokinase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf has output some glyceraldehyde 3-phosphate(2-)
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate EquivalentTo Entner-Doudoroff pathway through gluconate and (has part some 2-dehydro-3-deoxygluconokinase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has primary output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf glyceraldehyde-3-phosphate metabolic process
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
http://purl.obolibrary.org/obo/GO_0042352
GDP-L-fucose salvage EquivalentTo cellular metabolic compound salvage and (has output some GDP-L-fucose(2-))
GDP-L-fucose salvage SubClassOf has output some GDP-L-fucose(2-)
http://purl.obolibrary.org/obo/GO_0048194
Golgi vesicle budding EquivalentTo vesicle budding from membrane and (occurs in some Golgi membrane) and (has output some Golgi-associated vesicle)
Golgi vesicle budding SubClassOf has output some Golgi-associated vesicle
Golgi vesicle budding EquivalentTo vesicle budding from membrane and (occurs in some Golgi membrane) and (has primary output some Golgi-associated vesicle)
Golgi vesicle budding SubClassOf has primary output some Golgi-associated vesicle
http://purl.obolibrary.org/obo/GO_0043164
Gram-negative-bacterium-type cell wall biogenesis EquivalentTo cellular component biogenesis and (has output some Gram-negative-bacterium-type cell wall)
Gram-negative-bacterium-type cell wall biogenesis SubClassOf has output some Gram-negative-bacterium-type cell wall
Gram-negative-bacterium-type cell wall biogenesis EquivalentTo cellular component biogenesis and (has primary output some Gram-negative-bacterium-type cell wall)
Gram-negative-bacterium-type cell wall biogenesis SubClassOf has primary output some Gram-negative-bacterium-type cell wall
http://purl.obolibrary.org/obo/GO_0071267
L-methionine salvage EquivalentTo cellular metabolic compound salvage and (has output some L-methionine zwitterion)
L-methionine salvage SubClassOf has output some L-methionine zwitterion
http://purl.obolibrary.org/obo/GO_0034355
NAD salvage EquivalentTo cellular metabolic compound salvage and (has output some NAD)
NAD salvage SubClassOf has output some NAD
http://purl.obolibrary.org/obo/GO_0006116
NADH oxidation EquivalentTo metabolic process and (has input some NADH(2-)) and (has output some NAD(1-))
NADH oxidation SubClassOf metabolic process
NADH oxidation SubClassOf has output some NAD(1-)
NADH oxidation EquivalentTo metabolic process and (has input some NADH(2-)) and (has primary output some NAD(1-))
NADH oxidation SubClassOf NAD metabolic process
NADH oxidation SubClassOf has primary output some NAD(1-)
http://purl.obolibrary.org/obo/GO_0006735
NADH regeneration EquivalentTo metabolic process and (has input some NAD(1-)) and (has output some NADH(2-))
NADH regeneration SubClassOf has output some NADH(2-)
NADH regeneration SubClassOf metabolic process
NADH regeneration EquivalentTo metabolic process and (has input some NAD(1-)) and (has primary output some NADH(2-))
NADH regeneration SubClassOf NADH metabolic process
NADH regeneration SubClassOf has primary output some NADH(2-)
http://purl.obolibrary.org/obo/GO_0070995
NADPH oxidation EquivalentTo metabolic process and (has input some NADPH(4-)) and (has output some NADP(3-))
NADPH oxidation SubClassOf has output some NADP(3-)
NADPH oxidation EquivalentTo metabolic process and (has input some NADPH(4-)) and (has primary output some NADP(3-))
NADPH oxidation SubClassOf has primary output some NADP(3-)
http://purl.obolibrary.org/obo/GO_0006740
NADPH regeneration EquivalentTo metabolic process and (has input some NADP(3-)) and (has output some NADPH(4-))
NADPH regeneration SubClassOf has output some NADPH(4-)
NADPH regeneration EquivalentTo metabolic process and (has input some NADP(3-)) and (has primary output some NADPH(4-))
NADPH regeneration SubClassOf has primary output some NADPH(4-)
http://purl.obolibrary.org/obo/GO_0044206
UMP salvage EquivalentTo cellular metabolic compound salvage and (has output some uridine 5'-monophosphate(2-))
UMP salvage SubClassOf has output some uridine 5'-monophosphate(2-)
http://purl.obolibrary.org/obo/GO_0044571
[2Fe-2S] cluster assembly EquivalentTo cellular component assembly and (has output some Fe2S2 iron-sulfur cluster)
[2Fe-2S] cluster assembly SubClassOf has output some Fe2S2 iron-sulfur cluster
[2Fe-2S] cluster assembly EquivalentTo cellular component assembly and (has primary output some Fe2S2 iron-sulfur cluster)
[2Fe-2S] cluster assembly SubClassOf has primary output some Fe2S2 iron-sulfur cluster
http://purl.obolibrary.org/obo/GO_0044572
[4Fe-4S] cluster assembly EquivalentTo cellular component assembly and (has output some Fe4S4 iron-sulfur cluster)
[4Fe-4S] cluster assembly SubClassOf has output some Fe4S4 iron-sulfur cluster
[4Fe-4S] cluster assembly EquivalentTo cellular component assembly and (has primary output some Fe4S4 iron-sulfur cluster)
[4Fe-4S] cluster assembly SubClassOf has primary output some Fe4S4 iron-sulfur cluster
http://purl.obolibrary.org/obo/GO_0006168
adenine salvage EquivalentTo cellular metabolic compound salvage and (has output some adenine)
adenine salvage SubClassOf has output some adenine
http://purl.obolibrary.org/obo/GO_0006169
adenosine salvage EquivalentTo cellular metabolic compound salvage and (has output some adenosine)
adenosine salvage SubClassOf has output some adenosine
http://purl.obolibrary.org/obo/GO_0043102
amino acid salvage EquivalentTo cellular metabolic compound salvage and (has output some amino-acid anion)
amino acid salvage SubClassOf has output some amino-acid anion
http://purl.obolibrary.org/obo/GO_0009718
http://purl.obolibrary.org/obo/GO_0046283
anthocyanin-containing compound metabolic process EquivalentTo metabolic process and (has output some anthocyanin)
anthocyanin-containing compound metabolic process SubClassOf has output some anthocyanin
anthocyanin-containing compound metabolic process EquivalentTo metabolic process and (has primary output some anthocyanin)
anthocyanin-containing compound metabolic process SubClassOf has primary output some anthocyanin
http://purl.obolibrary.org/obo/GO_0007596
blood coagulation EquivalentTo coagulation and (has output some blood clot)
blood coagulation SubClassOf has output some blood clot
blood coagulation EquivalentTo coagulation and (has primary output some blood clot)
blood coagulation SubClassOf has primary output some blood clot
http://purl.obolibrary.org/obo/GO_0061621
http://purl.obolibrary.org/obo/GO_0042546
cell wall biogenesis EquivalentTo cellular component biogenesis and (has output some cell wall)
cell wall biogenesis SubClassOf has output some cell wall
cell wall biogenesis EquivalentTo cellular component biogenesis and (has primary output some cell wall)
cell wall biogenesis SubClassOf has primary output some cell wall
http://purl.obolibrary.org/obo/GO_0052781
chitobiose catabolic process EquivalentTo catabolic process and (has output some chitobioses)
chitobiose catabolic process SubClassOf has output some chitobioses
chitobiose catabolic process EquivalentTo catabolic process and (has primary output some chitobioses)
chitobiose catabolic process SubClassOf chitobiose metabolic process
chitobiose catabolic process SubClassOf has primary output some chitobioses
http://purl.obolibrary.org/obo/GO_0062032
cichorine biosynthetic process EquivalentTo biosynthetic process and (has output some cichorine)
cichorine biosynthetic process SubClassOf has output some cichorine
cichorine biosynthetic process EquivalentTo biosynthetic process and (has primary output some cichorine)
cichorine biosynthetic process SubClassOf organonitrogen compound biosynthetic process
cichorine biosynthetic process SubClassOf phenol-containing compound biosynthetic process
cichorine biosynthetic process SubClassOf heterocycle biosynthetic process
cichorine biosynthetic process SubClassOf has primary output some cichorine
http://purl.obolibrary.org/obo/GO_0036440
http://purl.obolibrary.org/obo/GO_0006236
cytidine salvage EquivalentTo cellular metabolic compound salvage and (has output some cytidine)
cytidine salvage SubClassOf has output some cytidine
http://purl.obolibrary.org/obo/GO_0006239
dCMP salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxycytosine 5'-monophosphate(2-))
dCMP salvage SubClassOf has output some 2'-deoxycytosine 5'-monophosphate(2-)
http://purl.obolibrary.org/obo/GO_0036198
dTMP salvage EquivalentTo cellular metabolic compound salvage and (has output some dTMP(2-))
dTMP salvage SubClassOf has output some dTMP(2-)
http://purl.obolibrary.org/obo/GO_0006237
deoxycytidine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxycytidine)
deoxycytidine salvage SubClassOf has output some 2'-deoxycytidine
http://purl.obolibrary.org/obo/GO_0006180
deoxyguanosine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxyguanosine)
deoxyguanosine salvage SubClassOf has output some 2'-deoxyguanosine
deoxyguanosine salvage EquivalentTo cellular metabolic compound salvage and (has primary output some 2'-deoxyguanosine)
deoxyguanosine salvage SubClassOf deoxyguanosine biosynthetic process
http://purl.obolibrary.org/obo/GO_0006191
deoxyinosine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxyinosine)
deoxyinosine salvage SubClassOf has output some 2'-deoxyinosine
http://purl.obolibrary.org/obo/GO_0160031
endoplasmic reticulum membrane biogenesis EquivalentTo cellular component biogenesis and (has output some endoplasmic reticulum membrane)
endoplasmic reticulum membrane biogenesis SubClassOf has output some endoplasmic reticulum membrane
endoplasmic reticulum membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some endoplasmic reticulum membrane)
endoplasmic reticulum membrane biogenesis SubClassOf has primary output some endoplasmic reticulum membrane
http://purl.obolibrary.org/obo/GO_0044812
fermentative hydrogen production EquivalentTo fermentation and (has output some dihydrogen)
fermentative hydrogen production SubClassOf has output some dihydrogen
http://purl.obolibrary.org/obo/GO_0031412
gas vesicle organization EquivalentTo cellular component organization and (has output some gas vesicle)
gas vesicle organization SubClassOf has output some gas vesicle
gas vesicle organization EquivalentTo cellular component organization and (has primary output some gas vesicle)
gas vesicle organization SubClassOf has primary output some gas vesicle
http://purl.obolibrary.org/obo/GO_0019658
glucose fermentation to lactate and acetate EquivalentTo catabolic process and (has output some lactate) and (has output some acetate) and (has primary input some glucose)
glucose fermentation to lactate and acetate SubClassOf has output some lactate
glucose fermentation to lactate and acetate SubClassOf glucose catabolic process
glucose fermentation to lactate and acetate SubClassOf has output some acetate
glucose fermentation to lactate and acetate EquivalentTo catabolic process and (has primary output some lactate) and (has primary output some acetate) and (has primary input some glucose)
glucose fermentation to lactate and acetate SubClassOf has primary output some acetate
glucose fermentation to lactate and acetate SubClassOf acetate metabolic process
glucose fermentation to lactate and acetate SubClassOf glucose catabolic process to lactate
http://purl.obolibrary.org/obo/GO_0019549
glutamate catabolic process to succinate via succinate semialdehyde SubClassOf succinate metabolic process
glutamate catabolic process to succinate via succinate semialdehyde SubClassOf has primary output some succinate(2-)
http://purl.obolibrary.org/obo/GO_0006540
glutamate decarboxylation to succinate EquivalentTo catabolic process and (has output some succinate(2-)) and (has primary input some glutamate(1-))
glutamate decarboxylation to succinate SubClassOf has output some succinate(2-)
glutamate decarboxylation to succinate EquivalentTo catabolic process and (has primary output some succinate(2-)) and (has primary input some glutamate(1-))
glutamate decarboxylation to succinate SubClassOf has primary output some succinate(2-)
glutamate decarboxylation to succinate SubClassOf succinate metabolic process
http://purl.obolibrary.org/obo/GO_0019462
glutamine catabolic process to fumarate, using glutaminase EquivalentTo catabolic process and (has part some glutaminase activity) and (has output some fumarate(2-)) and (has primary input some glutamate(1-))
glutamine catabolic process to fumarate, using glutaminase SubClassOf has output some fumarate(2-)
glutamine catabolic process to fumarate, using glutaminase SubClassOf glutamate catabolic process
glutamine catabolic process to fumarate, using glutaminase EquivalentTo catabolic process and (has part some glutaminase activity) and (has primary output some fumarate(2-)) and (has primary input some glutamate(1-))
glutamine catabolic process to fumarate, using glutaminase SubClassOf glutamine catabolic process to fumarate
http://purl.obolibrary.org/obo/GO_0061610
glycerol to glycerone phosphate metabolic process EquivalentTo glycerol metabolic process and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (starts with some glycerol kinase activity) and (has input some glycerol) and (has output some glycerone phosphate(2-))
glycerol to glycerone phosphate metabolic process SubClassOf has output some glycerone phosphate(2-)
glycerol to glycerone phosphate metabolic process EquivalentTo glycerol metabolic process and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (starts with some glycerol kinase activity) and (has input some glycerol) and (has primary output some glycerone phosphate(2-))
glycerol to glycerone phosphate metabolic process SubClassOf phosphate-containing compound metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf organophosphate metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf primary alcohol metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf carbohydrate derivative metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf has primary output some glycerone phosphate(2-)
glycerol to glycerone phosphate metabolic process SubClassOf cellular ketone metabolic process
http://purl.obolibrary.org/obo/GO_0006127
glycerophosphate shuttle EquivalentTo metabolic process and (has part some glycerol-3-phosphate dehydrogenase (quinone) activity) and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (has participant some sn-glycerol 3-phosphate(2-)) and (has input some NADH(2-)) and (has output some NAD(1-)) and (has primary input or output some glycerone phosphate(2-))
glycerophosphate shuttle SubClassOf phosphate-containing compound metabolic process
glycerophosphate shuttle SubClassOf organophosphate metabolic process
http://purl.obolibrary.org/obo/GO_0019650
glycolytic fermentation to butanediol EquivalentTo glycolytic fermentation and (has part some acetolactate synthase activity) and (has part some acetolactate decarboxylase activity) and (has part some diacetyl reductase ((R)-acetoin forming) activity) and (ends with some (R,R)-butanediol dehydrogenase activity) and (has input some glucose) and (has output some butane-2,3-diol)
glycolytic fermentation to butanediol SubClassOf has output some butane-2,3-diol
glycolytic fermentation to butanediol EquivalentTo glycolytic fermentation and (has part some acetolactate synthase activity) and (has part some acetolactate decarboxylase activity) and (has part some diacetyl reductase ((R)-acetoin forming) activity) and (ends with some (R,R)-butanediol dehydrogenase activity) and (has input some glucose) and (has primary output some butane-2,3-diol)
glycolytic fermentation to butanediol SubClassOf has primary output some butane-2,3-diol
glycolytic fermentation to butanediol SubClassOf butanediol metabolic process
http://purl.obolibrary.org/obo/GO_0019655
glycolytic fermentation to ethanol EquivalentTo glycolytic fermentation and (starts with some glycolytic process through fructose-6-phosphate) and (has input some glucose) and (has output some ethanol)
glycolytic fermentation to ethanol SubClassOf has output some ethanol
glycolytic fermentation to ethanol EquivalentTo glycolytic fermentation and (starts with some glycolytic process through fructose-6-phosphate) and (has input some glucose) and (has primary output some ethanol)
glycolytic fermentation to ethanol SubClassOf ethanol metabolic process
glycolytic fermentation to ethanol SubClassOf has primary output some ethanol
http://purl.obolibrary.org/obo/GO_0019657
glycolytic fermentation to propionate EquivalentTo glycolytic fermentation and (has part some propionyl-CoA:succinate CoA-transferase activity) and (has part some methylmalonyl-CoA carboxytransferase activity) and (starts with some transport-coupled glycolytic process through glucose-6-phosphate) and (has output some propionate)
glycolytic fermentation to propionate SubClassOf has output some propionate
glycolytic fermentation to propionate EquivalentTo glycolytic fermentation and (has part some propionyl-CoA:succinate CoA-transferase activity) and (has part some methylmalonyl-CoA carboxytransferase activity) and (starts with some transport-coupled glycolytic process through glucose-6-phosphate) and (has primary output some propionate)
glycolytic fermentation to propionate SubClassOf has primary output some propionate
http://purl.obolibrary.org/obo/GO_0006096
glycolytic process EquivalentTo carbohydrate catabolic process and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity) and (ends with some pyruvate kinase activity) and (has input some NAD(P)(+)) and (has input some ADP(3-)) and (has output some NAD(P)H) and (has output some ATP(4-)) and (has primary output some pyruvate)
glycolytic process SubClassOf has output some ATP(4-)
glycolytic process SubClassOf has output some NAD(P)H
glycolytic process EquivalentTo carbohydrate catabolic process and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity) and (ends with some pyruvate kinase activity) and (has input some NAD(P)(+)) and (has input some ADP(3-)) and (has primary output some NAD(P)H) and (has primary output some pyruvate) and (has primary output some ATP(4-))
glycolytic process SubClassOf has primary output some ATP(4-)
glycolytic process SubClassOf has primary output some NAD(P)H
glycolytic process SubClassOf ATP metabolic process
glycolytic process SubClassOf nicotinamide nucleotide metabolic process
http://purl.obolibrary.org/obo/GO_0006178
guanine salvage EquivalentTo cellular metabolic compound salvage and (has output some guanine)
guanine salvage SubClassOf has output some guanine
http://purl.obolibrary.org/obo/GO_0006179
guanosine salvage EquivalentTo cellular metabolic compound salvage and (has output some guanosine)
guanosine salvage SubClassOf has output some guanosine
http://purl.obolibrary.org/obo/GO_0043103
hypoxanthine salvage EquivalentTo cellular metabolic compound salvage and (has output some hypoxanthine)
hypoxanthine salvage SubClassOf has output some hypoxanthine
http://purl.obolibrary.org/obo/GO_0006190
inosine salvage EquivalentTo cellular metabolic compound salvage and (has output some inosine)
inosine salvage SubClassOf has output some inosine
http://purl.obolibrary.org/obo/GO_0016226
iron-sulfur cluster assembly EquivalentTo cellular component assembly and (has output some iron-sulfur cluster)
iron-sulfur cluster assembly SubClassOf has output some iron-sulfur cluster
iron-sulfur cluster assembly EquivalentTo cellular component assembly and (has primary output some iron-sulfur cluster)
iron-sulfur cluster assembly SubClassOf has primary output some iron-sulfur cluster
http://purl.obolibrary.org/obo/GO_0061611
mannose to fructose-6-phosphate metabolic process EquivalentTo metabolic process and (starts with some mannokinase activity) and (ends with some mannose-6-phosphate isomerase activity) and (has input some mannose) and (has output some D-fructose 6-phosphate(2-))
mannose to fructose-6-phosphate metabolic process SubClassOf has output some D-fructose 6-phosphate(2-)
mannose to fructose-6-phosphate metabolic process EquivalentTo metabolic process and (starts with some mannokinase activity) and (ends with some mannose-6-phosphate isomerase activity) and (has input some mannose) and (has primary output some D-fructose 6-phosphate(2-))
mannose to fructose-6-phosphate metabolic process SubClassOf has primary output some D-fructose 6-phosphate(2-)
mannose to fructose-6-phosphate metabolic process SubClassOf fructose 6-phosphate metabolic process
http://purl.obolibrary.org/obo/GO_0044091
membrane biogenesis EquivalentTo cellular component biogenesis and (has output some membrane)
membrane biogenesis SubClassOf has output some membrane
membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some membrane)
membrane biogenesis SubClassOf has primary output some membrane
http://purl.obolibrary.org/obo/GO_0031163
metallo-sulfur cluster assembly EquivalentTo cellular component assembly and (has output some metal-sulfur cluster)
metallo-sulfur cluster assembly SubClassOf has output some metal-sulfur cluster
metallo-sulfur cluster assembly EquivalentTo cellular component assembly and (has primary output some metal-sulfur cluster)
metallo-sulfur cluster assembly SubClassOf has primary output some metal-sulfur cluster
http://purl.obolibrary.org/obo/GO_0019664
mixed acid fermentation EquivalentTo glycolytic fermentation and (has input some glucose) and (has output some formate) and (has output some ethanol) and (has output some 2-oxoglutarate(2-)) and (has output some lactate) and (has output some succinate(2-)) and (has output some acetate)
mixed acid fermentation SubClassOf has output some 2-oxoglutarate(2-)
mixed acid fermentation SubClassOf has output some lactate
mixed acid fermentation SubClassOf has output some succinate(2-)
mixed acid fermentation SubClassOf has output some ethanol
mixed acid fermentation SubClassOf has output some formate
mixed acid fermentation SubClassOf has output some acetate
mixed acid fermentation EquivalentTo glycolytic fermentation and (has input some glucose) and (has primary output some formate) and (has primary output some ethanol) and (has primary output some 2-oxoglutarate(2-)) and (has primary output some lactate) and (has primary output some succinate(2-)) and (has primary output some acetate)
mixed acid fermentation SubClassOf formate metabolic process
mixed acid fermentation SubClassOf lactate metabolic process
mixed acid fermentation SubClassOf has primary output some acetate
mixed acid fermentation SubClassOf has primary output some formate
mixed acid fermentation SubClassOf acetate metabolic process
mixed acid fermentation SubClassOf ethanol metabolic process
mixed acid fermentation SubClassOf has primary output some succinate(2-)
mixed acid fermentation SubClassOf has primary output some ethanol
mixed acid fermentation SubClassOf 2-oxoglutarate metabolic process
mixed acid fermentation SubClassOf has primary output some lactate
mixed acid fermentation SubClassOf has primary output some 2-oxoglutarate(2-)
mixed acid fermentation SubClassOf succinate metabolic process
http://purl.obolibrary.org/obo/GO_2001155
http://purl.obolibrary.org/obo/GO_0045820
negative regulation of glycolytic process SubClassOf negative regulation of cellular metabolic process
negative regulation of glycolytic process SubClassOf negative regulation of small molecule metabolic process
http://purl.obolibrary.org/obo/GO_0019358
nicotinate nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some nicotinic acid nucleotide)
nicotinate nucleotide salvage SubClassOf has output some nicotinic acid nucleotide
http://purl.obolibrary.org/obo/GO_0002537
http://purl.obolibrary.org/obo/GO_0101025
nuclear membrane biogenesis EquivalentTo cellular component biogenesis and (has output some nuclear membrane)
nuclear membrane biogenesis SubClassOf has output some nuclear membrane
nuclear membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some nuclear membrane)
nuclear membrane biogenesis SubClassOf has primary output some nuclear membrane
http://purl.obolibrary.org/obo/GO_0017126
nucleologenesis EquivalentTo cellular component biogenesis and (has output some nucleolus)
nucleologenesis SubClassOf has output some nucleolus
nucleologenesis EquivalentTo cellular component biogenesis and (has primary output some nucleolus)
nucleologenesis SubClassOf has primary output some nucleolus
http://purl.obolibrary.org/obo/GO_0043174
nucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some nucleoside)
nucleoside salvage SubClassOf has output some nucleoside
http://purl.obolibrary.org/obo/GO_0043173
nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some nucleotide)
nucleotide salvage SubClassOf has output some nucleotide
http://purl.obolibrary.org/obo/GO_0006098
http://purl.obolibrary.org/obo/GO_0009052
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has part some D-ribulose-phosphate 3-epimerase activity) and (has part some ribose-5-phosphate isomerase activity) and (has part some transaldolase activity) and (has part some transketolase activity) and (has input some D-ribose 5-phosphate) and (has output some glyceraldehyde 3-phosphate(2-)) and (has output some D-fructose 6-phosphate)
pentose-phosphate shunt, non-oxidative branch SubClassOf has output some D-fructose 6-phosphate
pentose-phosphate shunt, non-oxidative branch SubClassOf has output some glyceraldehyde 3-phosphate(2-)
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has part some D-ribulose-phosphate 3-epimerase activity) and (has part some ribose-5-phosphate isomerase activity) and (has part some transaldolase activity) and (has part some transketolase activity) and (has input some D-ribose 5-phosphate) and (has primary output some glyceraldehyde 3-phosphate(2-)) and (has primary output some D-fructose 6-phosphate)
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some D-fructose 6-phosphate
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
pentose-phosphate shunt, non-oxidative branch SubClassOf glyceraldehyde-3-phosphate metabolic process
http://purl.obolibrary.org/obo/GO_0009051
http://purl.obolibrary.org/obo/GO_0018396
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine EquivalentTo peptidyl-lysine hydroxylation and (has output some 4-hydroxy-L-lysine(1+))
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf has output some 4-hydroxy-L-lysine(1+)
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine EquivalentTo peptidyl-lysine hydroxylation and (has primary output some 4-hydroxy-L-lysine(1+))
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf has primary output some 4-hydroxy-L-lysine(1+)
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf alpha-amino acid metabolic process
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf cellular modified amino acid metabolic process
http://purl.obolibrary.org/obo/GO_0018400
peptidyl-proline hydroxylation to 3-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has output some 3-hydroxy-L-proline)
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf has output some 3-hydroxy-L-proline
peptidyl-proline hydroxylation to 3-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has primary output some 3-hydroxy-L-proline)
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf alpha-amino acid metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf cellular modified amino acid metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf has primary output some 3-hydroxy-L-proline
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf organic cyclic compound metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf heterocycle metabolic process
http://purl.obolibrary.org/obo/GO_0018401
peptidyl-proline hydroxylation to 4-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has output some 4-hydroxy-L-proline zwitterion)
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf has output some 4-hydroxy-L-proline zwitterion
peptidyl-proline hydroxylation to 4-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has primary output some 4-hydroxy-L-proline zwitterion)
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf has primary output some 4-hydroxy-L-proline zwitterion
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf 4-hydroxyproline metabolic process
http://purl.obolibrary.org/obo/GO_0016557
peroxisome membrane biogenesis EquivalentTo cellular component biogenesis and (has output some peroxisomal membrane)
peroxisome membrane biogenesis SubClassOf has output some peroxisomal membrane
peroxisome membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some peroxisomal membrane)
peroxisome membrane biogenesis SubClassOf has primary output some peroxisomal membrane
http://purl.obolibrary.org/obo/GO_0033307
phytol salvage EquivalentTo cellular metabolic compound salvage and (has output some phytol)
phytol salvage SubClassOf has output some phytol
http://purl.obolibrary.org/obo/GO_2001172
http://purl.obolibrary.org/obo/GO_0045821
http://purl.obolibrary.org/obo/GO_0031671
primary cell septum biogenesis EquivalentTo cellular component biogenesis and (has output some primary cell septum)
primary cell septum biogenesis SubClassOf has output some primary cell septum
primary cell septum biogenesis EquivalentTo cellular component biogenesis and (has primary output some primary cell septum)
primary cell septum biogenesis SubClassOf has primary output some primary cell septum
http://purl.obolibrary.org/obo/GO_0019492
proline salvage EquivalentTo cellular metabolic compound salvage and (has output some prolinate)
proline salvage SubClassOf has output some prolinate
http://purl.obolibrary.org/obo/GO_0043098
purine deoxyribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some purine deoxyribonucleoside)
purine deoxyribonucleoside salvage SubClassOf has output some purine deoxyribonucleoside
http://purl.obolibrary.org/obo/GO_0043096
purine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has output some purine nucleobase)
purine nucleobase salvage SubClassOf has output some purine nucleobase
http://purl.obolibrary.org/obo/GO_0006166
purine ribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some purine ribonucleoside)
purine ribonucleoside salvage SubClassOf has output some purine ribonucleoside
http://purl.obolibrary.org/obo/GO_0043101
purine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has output some purines)
purine-containing compound salvage SubClassOf has output some purines
http://purl.obolibrary.org/obo/GO_0019365
pyridine nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyridine nucleotide)
pyridine nucleotide salvage SubClassOf has output some pyridine nucleotide
http://purl.obolibrary.org/obo/GO_0009443
pyridoxal 5'-phosphate salvage EquivalentTo cellular metabolic compound salvage and (has output some pyridoxal 5'-phosphate(2-))
pyridoxal 5'-phosphate salvage SubClassOf has output some pyridoxal 5'-phosphate(2-)
http://purl.obolibrary.org/obo/GO_0043099
pyrimidine deoxyribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine 2'-deoxyribonucleoside)
pyrimidine deoxyribonucleoside salvage SubClassOf has output some pyrimidine 2'-deoxyribonucleoside
http://purl.obolibrary.org/obo/GO_0010139
pyrimidine deoxyribonucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine 2'-deoxyribonucleotide)
pyrimidine deoxyribonucleotide salvage SubClassOf has output some pyrimidine 2'-deoxyribonucleotide
http://purl.obolibrary.org/obo/GO_0043100
pyrimidine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleobase)
pyrimidine nucleobase salvage SubClassOf has output some pyrimidine nucleobase
pyrimidine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has primary output some pyrimidine nucleobase)
pyrimidine nucleobase salvage SubClassOf pyrimidine nucleobase biosynthetic process
http://purl.obolibrary.org/obo/GO_0043097
pyrimidine nucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleoside)
pyrimidine nucleoside salvage SubClassOf has output some pyrimidine nucleoside
http://purl.obolibrary.org/obo/GO_0032262
pyrimidine nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleotide)
pyrimidine nucleotide salvage SubClassOf has output some pyrimidine nucleotide
http://purl.obolibrary.org/obo/GO_0010138
pyrimidine ribonucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine ribonucleotide)
pyrimidine ribonucleotide salvage SubClassOf has output some pyrimidine ribonucleotide
http://purl.obolibrary.org/obo/GO_0008655
pyrimidine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidines)
pyrimidine-containing compound salvage SubClassOf has output some pyrimidines
pyrimidine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has primary output some pyrimidines)
pyrimidine-containing compound salvage SubClassOf pyrimidine-containing compound biosynthetic process
http://purl.obolibrary.org/obo/GO_1990397
queuosine salvage EquivalentTo cellular metabolic compound salvage and (has output some queuosine)
queuosine salvage SubClassOf has output some queuosine
http://purl.obolibrary.org/obo/GO_2001154
http://purl.obolibrary.org/obo/GO_0006110
http://purl.obolibrary.org/obo/GO_0045313
rhabdomere membrane biogenesis EquivalentTo cellular component biogenesis and (has output some rhabdomere membrane)
rhabdomere membrane biogenesis SubClassOf has output some rhabdomere membrane
rhabdomere membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some rhabdomere membrane)
rhabdomere membrane biogenesis SubClassOf has primary output some rhabdomere membrane
http://purl.obolibrary.org/obo/GO_1990344
secondary cell septum biogenesis EquivalentTo cellular component biogenesis and (has output some secondary cell septum)
secondary cell septum biogenesis SubClassOf has output some secondary cell septum
secondary cell septum biogenesis EquivalentTo cellular component biogenesis and (has primary output some secondary cell septum)
secondary cell septum biogenesis SubClassOf has primary output some secondary cell septum
http://purl.obolibrary.org/obo/GO_1990417
snoRNA release from pre-rRNA SubClassOf sno(s)RNA metabolic process
snoRNA release from pre-rRNA SubClassOf has primary output some snoRNA
http://purl.obolibrary.org/obo/GO_0120178
steroid hormone biosynthetic process EquivalentTo steroid biosynthetic process and (has output some steroid hormone)
steroid hormone biosynthetic process SubClassOf has output some steroid hormone
steroid hormone biosynthetic process EquivalentTo steroid biosynthetic process and (has primary output some steroid hormone)
steroid hormone biosynthetic process SubClassOf has primary output some steroid hormone
http://purl.obolibrary.org/obo/GO_0061722
sulphoglycolysis EquivalentTo catabolic process and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity) and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some triose-phosphate isomerase activity) and (has participant some ADP(3-)) and (has participant some NAD(1-)) and (starts with some 6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde) and (ends with some pyruvate kinase activity) and (has output some pyruvate) and (has output some ATP(4-)) and (has output some NADH(2-)) and (has primary input some 6-sulfo-D-quinovose(1-))
sulphoglycolysis SubClassOf has output some NADH(2-)
sulphoglycolysis SubClassOf has output some ATP(4-)
sulphoglycolysis SubClassOf has output some pyruvate
sulphoglycolysis EquivalentTo catabolic process and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity) and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some triose-phosphate isomerase activity) and (has participant some ADP(3-)) and (has participant some NAD(1-)) and (starts with some 6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde) and (ends with some pyruvate kinase activity) and (has primary output some pyruvate) and (has primary output some ATP(4-)) and (has primary output some NADH(2-)) and (has primary input some 6-sulfo-D-quinovose(1-))
sulphoglycolysis SubClassOf has primary output some NADH(2-)
sulphoglycolysis SubClassOf has primary output some ATP(4-)
sulphoglycolysis SubClassOf ATP metabolic process
sulphoglycolysis SubClassOf has primary output some pyruvate
sulphoglycolysis SubClassOf pyruvate metabolic process
sulphoglycolysis SubClassOf NADH metabolic process
http://purl.obolibrary.org/obo/GO_0070142
synaptic vesicle budding EquivalentTo vesicle budding from membrane and (has output some synaptic vesicle)
synaptic vesicle budding SubClassOf has output some synaptic vesicle
synaptic vesicle budding EquivalentTo vesicle budding from membrane and (has primary output some synaptic vesicle)
synaptic vesicle budding SubClassOf has primary output some synaptic vesicle
http://purl.obolibrary.org/obo/GO_0036172
thiamine salvage EquivalentTo cellular metabolic compound salvage and (has output some thiamine(1+))
thiamine salvage SubClassOf has output some thiamine(1+)
http://purl.obolibrary.org/obo/GO_0019604
toluene oxidation to catechol EquivalentTo toluene oxidation and (has output some catechol)
toluene oxidation to catechol SubClassOf has output some catechol
toluene oxidation to catechol EquivalentTo toluene oxidation and (has primary output some catechol)
toluene oxidation to catechol SubClassOf has primary output some catechol
http://purl.obolibrary.org/obo/GO_0006223
uracil salvage EquivalentTo cellular metabolic compound salvage and (has output some uracil)
uracil salvage SubClassOf has output some uracil
uracil salvage EquivalentTo cellular metabolic compound salvage and (has primary output some uracil)
Sorry, something went wrong.
38646a1There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2023-10-04/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owlRight
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2023-10-04/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owlOntology imports
Ontology annotations
ATP generation from poly-ADP-D-ribose
http://purl.obolibrary.org/obo/GO_1990966Removed
ATP generation from poly-ADP-D-ribose EquivalentTo metabolic process and (has output some ATP(4-)) and (has primary input or output some poly-ADP-D-ribose)
ATP generation from poly-ADP-D-ribose SubClassOf has output some ATP(4-)
Added
ATP generation from poly-ADP-D-ribose EquivalentTo metabolic process and (has primary input or output some poly-ADP-D-ribose) and (has primary output some ATP(4-))
ATP generation from poly-ADP-D-ribose SubClassOf has primary output some ATP(4-)
CMP salvage
http://purl.obolibrary.org/obo/GO_0006238Removed
CMP salvage EquivalentTo cellular metabolic compound salvage and (has output some cytidine 5'-monophosphate(2-))
CMP salvage SubClassOf has output some cytidine 5'-monophosphate(2-)
Added
CTP salvage
http://purl.obolibrary.org/obo/GO_0044211Removed
CTP salvage EquivalentTo cellular metabolic compound salvage and (has output some CTP(4-))
CTP salvage SubClassOf has output some CTP(4-)
Added
Entner-Doudoroff pathway
http://purl.obolibrary.org/obo/GO_0061678Removed
Added
Entner-Doudoroff pathway SubClassOf pyruvate metabolic process
Entner-Doudoroff pathway SubClassOf has primary output some pyruvate
Entner-Doudoroff pathway through 6-phosphogluconate
http://purl.obolibrary.org/obo/GO_0009255Removed
Entner-Doudoroff pathway through 6-phosphogluconate EquivalentTo Entner-Doudoroff pathway and (has part some phosphogluconate dehydratase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has output some pyruvate) and (has output some glyceraldehyde 3-phosphate(2-)) and (has intermediate some 6-phosphonatooxy-D-gluconate)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf has output some glyceraldehyde 3-phosphate(2-)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf small molecule metabolic process
Added
Entner-Doudoroff pathway through 6-phosphogluconate EquivalentTo Entner-Doudoroff pathway and (has part some phosphogluconate dehydratase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has intermediate some 6-phosphonatooxy-D-gluconate) and (has primary output some pyruvate) and (has primary output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
Entner-Doudoroff pathway through 6-phosphogluconate SubClassOf glyceraldehyde-3-phosphate metabolic process
Entner-Doudoroff pathway through gluconate
http://purl.obolibrary.org/obo/GO_0061679Removed
Added
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde
http://purl.obolibrary.org/obo/GO_0061680Removed
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde EquivalentTo Entner-Doudoroff pathway through gluconate and (ends with some 2-dehydro-3-deoxy-D-gluconate aldolase activity) and (has output some D-glyceraldehyde)
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf has output some D-glyceraldehyde
Added
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde EquivalentTo Entner-Doudoroff pathway through gluconate and (ends with some 2-dehydro-3-deoxy-D-gluconate aldolase activity) and (has primary output some D-glyceraldehyde)
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf monosaccharide metabolic process
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde SubClassOf has primary output some D-glyceraldehyde
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate
http://purl.obolibrary.org/obo/GO_0061681Removed
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate EquivalentTo Entner-Doudoroff pathway through gluconate and (has part some 2-dehydro-3-deoxygluconokinase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf has output some glyceraldehyde 3-phosphate(2-)
Added
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate EquivalentTo Entner-Doudoroff pathway through gluconate and (has part some 2-dehydro-3-deoxygluconokinase activity) and (ends with some 2-dehydro-3-deoxy-phosphogluconate aldolase activity) and (has primary output some glyceraldehyde 3-phosphate(2-))
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf glyceraldehyde-3-phosphate metabolic process
Entner-Doudoroff pathway through gluconate to D-glyceraldehyde-3-phosphate SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
GDP-L-fucose salvage
http://purl.obolibrary.org/obo/GO_0042352Removed
GDP-L-fucose salvage EquivalentTo cellular metabolic compound salvage and (has output some GDP-L-fucose(2-))
GDP-L-fucose salvage SubClassOf has output some GDP-L-fucose(2-)
Added
Golgi vesicle budding
http://purl.obolibrary.org/obo/GO_0048194Removed
Golgi vesicle budding EquivalentTo vesicle budding from membrane and (occurs in some Golgi membrane) and (has output some Golgi-associated vesicle)
Golgi vesicle budding SubClassOf has output some Golgi-associated vesicle
Added
Golgi vesicle budding EquivalentTo vesicle budding from membrane and (occurs in some Golgi membrane) and (has primary output some Golgi-associated vesicle)
Golgi vesicle budding SubClassOf has primary output some Golgi-associated vesicle
Gram-negative-bacterium-type cell wall biogenesis
http://purl.obolibrary.org/obo/GO_0043164Removed
Gram-negative-bacterium-type cell wall biogenesis EquivalentTo cellular component biogenesis and (has output some Gram-negative-bacterium-type cell wall)
Gram-negative-bacterium-type cell wall biogenesis SubClassOf has output some Gram-negative-bacterium-type cell wall
Added
Gram-negative-bacterium-type cell wall biogenesis EquivalentTo cellular component biogenesis and (has primary output some Gram-negative-bacterium-type cell wall)
Gram-negative-bacterium-type cell wall biogenesis SubClassOf has primary output some Gram-negative-bacterium-type cell wall
L-methionine salvage
http://purl.obolibrary.org/obo/GO_0071267Removed
L-methionine salvage EquivalentTo cellular metabolic compound salvage and (has output some L-methionine zwitterion)
L-methionine salvage SubClassOf has output some L-methionine zwitterion
Added
NAD salvage
http://purl.obolibrary.org/obo/GO_0034355Removed
NAD salvage EquivalentTo cellular metabolic compound salvage and (has output some NAD)
NAD salvage SubClassOf has output some NAD
Added
NADH oxidation
http://purl.obolibrary.org/obo/GO_0006116Removed
NADH oxidation EquivalentTo metabolic process and (has input some NADH(2-)) and (has output some NAD(1-))
NADH oxidation SubClassOf metabolic process
NADH oxidation SubClassOf has output some NAD(1-)
Added
NADH oxidation EquivalentTo metabolic process and (has input some NADH(2-)) and (has primary output some NAD(1-))
NADH oxidation SubClassOf NAD metabolic process
NADH oxidation SubClassOf has primary output some NAD(1-)
NADH regeneration
http://purl.obolibrary.org/obo/GO_0006735Removed
NADH regeneration EquivalentTo metabolic process and (has input some NAD(1-)) and (has output some NADH(2-))
NADH regeneration SubClassOf has output some NADH(2-)
NADH regeneration SubClassOf metabolic process
Added
NADH regeneration EquivalentTo metabolic process and (has input some NAD(1-)) and (has primary output some NADH(2-))
NADH regeneration SubClassOf NADH metabolic process
NADH regeneration SubClassOf has primary output some NADH(2-)
NADPH oxidation
http://purl.obolibrary.org/obo/GO_0070995Removed
NADPH oxidation EquivalentTo metabolic process and (has input some NADPH(4-)) and (has output some NADP(3-))
NADPH oxidation SubClassOf has output some NADP(3-)
Added
NADPH oxidation EquivalentTo metabolic process and (has input some NADPH(4-)) and (has primary output some NADP(3-))
NADPH oxidation SubClassOf has primary output some NADP(3-)
NADPH regeneration
http://purl.obolibrary.org/obo/GO_0006740Removed
NADPH regeneration EquivalentTo metabolic process and (has input some NADP(3-)) and (has output some NADPH(4-))
NADPH regeneration SubClassOf has output some NADPH(4-)
Added
NADPH regeneration EquivalentTo metabolic process and (has input some NADP(3-)) and (has primary output some NADPH(4-))
NADPH regeneration SubClassOf has primary output some NADPH(4-)
UMP salvage
http://purl.obolibrary.org/obo/GO_0044206Removed
UMP salvage EquivalentTo cellular metabolic compound salvage and (has output some uridine 5'-monophosphate(2-))
UMP salvage SubClassOf has output some uridine 5'-monophosphate(2-)
Added
[2Fe-2S] cluster assembly
http://purl.obolibrary.org/obo/GO_0044571Removed
[2Fe-2S] cluster assembly EquivalentTo cellular component assembly and (has output some Fe2S2 iron-sulfur cluster)
[2Fe-2S] cluster assembly SubClassOf has output some Fe2S2 iron-sulfur cluster
Added
[2Fe-2S] cluster assembly EquivalentTo cellular component assembly and (has primary output some Fe2S2 iron-sulfur cluster)
[2Fe-2S] cluster assembly SubClassOf has primary output some Fe2S2 iron-sulfur cluster
[4Fe-4S] cluster assembly
http://purl.obolibrary.org/obo/GO_0044572Removed
[4Fe-4S] cluster assembly EquivalentTo cellular component assembly and (has output some Fe4S4 iron-sulfur cluster)
[4Fe-4S] cluster assembly SubClassOf has output some Fe4S4 iron-sulfur cluster
Added
[4Fe-4S] cluster assembly EquivalentTo cellular component assembly and (has primary output some Fe4S4 iron-sulfur cluster)
[4Fe-4S] cluster assembly SubClassOf has primary output some Fe4S4 iron-sulfur cluster
adenine salvage
http://purl.obolibrary.org/obo/GO_0006168Removed
adenine salvage EquivalentTo cellular metabolic compound salvage and (has output some adenine)
adenine salvage SubClassOf has output some adenine
Added
adenosine salvage
http://purl.obolibrary.org/obo/GO_0006169Removed
adenosine salvage EquivalentTo cellular metabolic compound salvage and (has output some adenosine)
adenosine salvage SubClassOf has output some adenosine
Added
amino acid salvage
http://purl.obolibrary.org/obo/GO_0043102Removed
amino acid salvage EquivalentTo cellular metabolic compound salvage and (has output some amino-acid anion)
amino acid salvage SubClassOf has output some amino-acid anion
Added
anthocyanin-containing compound biosynthetic process
http://purl.obolibrary.org/obo/GO_0009718Removed
anthocyanin-containing compound metabolic process
http://purl.obolibrary.org/obo/GO_0046283Removed
anthocyanin-containing compound metabolic process EquivalentTo metabolic process and (has output some anthocyanin)
anthocyanin-containing compound metabolic process SubClassOf has output some anthocyanin
Added
anthocyanin-containing compound metabolic process EquivalentTo metabolic process and (has primary output some anthocyanin)
anthocyanin-containing compound metabolic process SubClassOf has primary output some anthocyanin
blood coagulation
http://purl.obolibrary.org/obo/GO_0007596Removed
blood coagulation EquivalentTo coagulation and (has output some blood clot)
blood coagulation SubClassOf has output some blood clot
Added
blood coagulation EquivalentTo coagulation and (has primary output some blood clot)
blood coagulation SubClassOf has primary output some blood clot
canonical glycolysis
http://purl.obolibrary.org/obo/GO_0061621Removed
Added
cell wall biogenesis
http://purl.obolibrary.org/obo/GO_0042546Removed
cell wall biogenesis EquivalentTo cellular component biogenesis and (has output some cell wall)
cell wall biogenesis SubClassOf has output some cell wall
Added
cell wall biogenesis EquivalentTo cellular component biogenesis and (has primary output some cell wall)
cell wall biogenesis SubClassOf has primary output some cell wall
chitobiose catabolic process
http://purl.obolibrary.org/obo/GO_0052781Removed
chitobiose catabolic process EquivalentTo catabolic process and (has output some chitobioses)
chitobiose catabolic process SubClassOf has output some chitobioses
Added
chitobiose catabolic process EquivalentTo catabolic process and (has primary output some chitobioses)
chitobiose catabolic process SubClassOf chitobiose metabolic process
chitobiose catabolic process SubClassOf has primary output some chitobioses
cichorine biosynthetic process
http://purl.obolibrary.org/obo/GO_0062032Removed
cichorine biosynthetic process EquivalentTo biosynthetic process and (has output some cichorine)
cichorine biosynthetic process SubClassOf has output some cichorine
Added
cichorine biosynthetic process EquivalentTo biosynthetic process and (has primary output some cichorine)
cichorine biosynthetic process SubClassOf organonitrogen compound biosynthetic process
cichorine biosynthetic process SubClassOf phenol-containing compound biosynthetic process
cichorine biosynthetic process SubClassOf heterocycle biosynthetic process
cichorine biosynthetic process SubClassOf has primary output some cichorine
citrate synthase activity
http://purl.obolibrary.org/obo/GO_0036440Removed
Added
cytidine salvage
http://purl.obolibrary.org/obo/GO_0006236Removed
cytidine salvage EquivalentTo cellular metabolic compound salvage and (has output some cytidine)
cytidine salvage SubClassOf has output some cytidine
Added
dCMP salvage
http://purl.obolibrary.org/obo/GO_0006239Removed
dCMP salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxycytosine 5'-monophosphate(2-))
dCMP salvage SubClassOf has output some 2'-deoxycytosine 5'-monophosphate(2-)
Added
dTMP salvage
http://purl.obolibrary.org/obo/GO_0036198Removed
dTMP salvage EquivalentTo cellular metabolic compound salvage and (has output some dTMP(2-))
dTMP salvage SubClassOf has output some dTMP(2-)
Added
deoxycytidine salvage
http://purl.obolibrary.org/obo/GO_0006237Removed
deoxycytidine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxycytidine)
deoxycytidine salvage SubClassOf has output some 2'-deoxycytidine
Added
deoxyguanosine salvage
http://purl.obolibrary.org/obo/GO_0006180Removed
deoxyguanosine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxyguanosine)
deoxyguanosine salvage SubClassOf has output some 2'-deoxyguanosine
Added
deoxyguanosine salvage EquivalentTo cellular metabolic compound salvage and (has primary output some 2'-deoxyguanosine)
deoxyguanosine salvage SubClassOf deoxyguanosine biosynthetic process
deoxyinosine salvage
http://purl.obolibrary.org/obo/GO_0006191Removed
deoxyinosine salvage EquivalentTo cellular metabolic compound salvage and (has output some 2'-deoxyinosine)
deoxyinosine salvage SubClassOf has output some 2'-deoxyinosine
Added
endoplasmic reticulum membrane biogenesis
http://purl.obolibrary.org/obo/GO_0160031Removed
endoplasmic reticulum membrane biogenesis EquivalentTo cellular component biogenesis and (has output some endoplasmic reticulum membrane)
endoplasmic reticulum membrane biogenesis SubClassOf has output some endoplasmic reticulum membrane
Added
endoplasmic reticulum membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some endoplasmic reticulum membrane)
endoplasmic reticulum membrane biogenesis SubClassOf has primary output some endoplasmic reticulum membrane
fermentative hydrogen production
http://purl.obolibrary.org/obo/GO_0044812Removed
fermentative hydrogen production EquivalentTo fermentation and (has output some dihydrogen)
fermentative hydrogen production SubClassOf has output some dihydrogen
Added
gas vesicle organization
http://purl.obolibrary.org/obo/GO_0031412Removed
gas vesicle organization EquivalentTo cellular component organization and (has output some gas vesicle)
gas vesicle organization SubClassOf has output some gas vesicle
Added
gas vesicle organization EquivalentTo cellular component organization and (has primary output some gas vesicle)
gas vesicle organization SubClassOf has primary output some gas vesicle
glucose fermentation to lactate and acetate
http://purl.obolibrary.org/obo/GO_0019658Removed
glucose fermentation to lactate and acetate EquivalentTo catabolic process and (has output some lactate) and (has output some acetate) and (has primary input some glucose)
glucose fermentation to lactate and acetate SubClassOf has output some lactate
glucose fermentation to lactate and acetate SubClassOf glucose catabolic process
glucose fermentation to lactate and acetate SubClassOf has output some acetate
Added
glucose fermentation to lactate and acetate EquivalentTo catabolic process and (has primary output some lactate) and (has primary output some acetate) and (has primary input some glucose)
glucose fermentation to lactate and acetate SubClassOf has primary output some acetate
glucose fermentation to lactate and acetate SubClassOf acetate metabolic process
glucose fermentation to lactate and acetate SubClassOf glucose catabolic process to lactate
glutamate catabolic process to succinate via succinate semialdehyde
http://purl.obolibrary.org/obo/GO_0019549Removed
glutamate catabolic process to succinate via succinate semialdehyde SubClassOf succinate metabolic process
glutamate catabolic process to succinate via succinate semialdehyde SubClassOf has primary output some succinate(2-)
glutamate decarboxylation to succinate
http://purl.obolibrary.org/obo/GO_0006540Removed
glutamate decarboxylation to succinate EquivalentTo catabolic process and (has output some succinate(2-)) and (has primary input some glutamate(1-))
glutamate decarboxylation to succinate SubClassOf has output some succinate(2-)
Added
glutamate decarboxylation to succinate EquivalentTo catabolic process and (has primary output some succinate(2-)) and (has primary input some glutamate(1-))
glutamate decarboxylation to succinate SubClassOf has primary output some succinate(2-)
glutamate decarboxylation to succinate SubClassOf succinate metabolic process
glutamine catabolic process to fumarate, using glutaminase
http://purl.obolibrary.org/obo/GO_0019462Removed
glutamine catabolic process to fumarate, using glutaminase EquivalentTo catabolic process and (has part some glutaminase activity) and (has output some fumarate(2-)) and (has primary input some glutamate(1-))
glutamine catabolic process to fumarate, using glutaminase SubClassOf has output some fumarate(2-)
glutamine catabolic process to fumarate, using glutaminase SubClassOf glutamate catabolic process
Added
glutamine catabolic process to fumarate, using glutaminase EquivalentTo catabolic process and (has part some glutaminase activity) and (has primary output some fumarate(2-)) and (has primary input some glutamate(1-))
glutamine catabolic process to fumarate, using glutaminase SubClassOf glutamine catabolic process to fumarate
glycerol to glycerone phosphate metabolic process
http://purl.obolibrary.org/obo/GO_0061610Removed
glycerol to glycerone phosphate metabolic process EquivalentTo glycerol metabolic process and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (starts with some glycerol kinase activity) and (has input some glycerol) and (has output some glycerone phosphate(2-))
glycerol to glycerone phosphate metabolic process SubClassOf has output some glycerone phosphate(2-)
Added
glycerol to glycerone phosphate metabolic process EquivalentTo glycerol metabolic process and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (starts with some glycerol kinase activity) and (has input some glycerol) and (has primary output some glycerone phosphate(2-))
glycerol to glycerone phosphate metabolic process SubClassOf phosphate-containing compound metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf organophosphate metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf primary alcohol metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf carbohydrate derivative metabolic process
glycerol to glycerone phosphate metabolic process SubClassOf has primary output some glycerone phosphate(2-)
glycerol to glycerone phosphate metabolic process SubClassOf cellular ketone metabolic process
glycerophosphate shuttle
http://purl.obolibrary.org/obo/GO_0006127Removed
glycerophosphate shuttle EquivalentTo metabolic process and (has part some glycerol-3-phosphate dehydrogenase (quinone) activity) and (has part some glycerol-3-phosphate dehydrogenase [NAD(P)+] activity) and (has participant some sn-glycerol 3-phosphate(2-)) and (has input some NADH(2-)) and (has output some NAD(1-)) and (has primary input or output some glycerone phosphate(2-))
glycerophosphate shuttle SubClassOf phosphate-containing compound metabolic process
glycerophosphate shuttle SubClassOf organophosphate metabolic process
Added
glycolytic fermentation to butanediol
http://purl.obolibrary.org/obo/GO_0019650Removed
glycolytic fermentation to butanediol EquivalentTo glycolytic fermentation and (has part some acetolactate synthase activity) and (has part some acetolactate decarboxylase activity) and (has part some diacetyl reductase ((R)-acetoin forming) activity) and (ends with some (R,R)-butanediol dehydrogenase activity) and (has input some glucose) and (has output some butane-2,3-diol)
glycolytic fermentation to butanediol SubClassOf has output some butane-2,3-diol
Added
glycolytic fermentation to butanediol EquivalentTo glycolytic fermentation and (has part some acetolactate synthase activity) and (has part some acetolactate decarboxylase activity) and (has part some diacetyl reductase ((R)-acetoin forming) activity) and (ends with some (R,R)-butanediol dehydrogenase activity) and (has input some glucose) and (has primary output some butane-2,3-diol)
glycolytic fermentation to butanediol SubClassOf has primary output some butane-2,3-diol
glycolytic fermentation to butanediol SubClassOf butanediol metabolic process
glycolytic fermentation to ethanol
http://purl.obolibrary.org/obo/GO_0019655Removed
glycolytic fermentation to ethanol EquivalentTo glycolytic fermentation and (starts with some glycolytic process through fructose-6-phosphate) and (has input some glucose) and (has output some ethanol)
glycolytic fermentation to ethanol SubClassOf has output some ethanol
Added
glycolytic fermentation to ethanol EquivalentTo glycolytic fermentation and (starts with some glycolytic process through fructose-6-phosphate) and (has input some glucose) and (has primary output some ethanol)
glycolytic fermentation to ethanol SubClassOf ethanol metabolic process
glycolytic fermentation to ethanol SubClassOf has primary output some ethanol
glycolytic fermentation to propionate
http://purl.obolibrary.org/obo/GO_0019657Removed
glycolytic fermentation to propionate EquivalentTo glycolytic fermentation and (has part some propionyl-CoA:succinate CoA-transferase activity) and (has part some methylmalonyl-CoA carboxytransferase activity) and (starts with some transport-coupled glycolytic process through glucose-6-phosphate) and (has output some propionate)
glycolytic fermentation to propionate SubClassOf has output some propionate
Added
glycolytic fermentation to propionate EquivalentTo glycolytic fermentation and (has part some propionyl-CoA:succinate CoA-transferase activity) and (has part some methylmalonyl-CoA carboxytransferase activity) and (starts with some transport-coupled glycolytic process through glucose-6-phosphate) and (has primary output some propionate)
glycolytic fermentation to propionate SubClassOf has primary output some propionate
glycolytic process
http://purl.obolibrary.org/obo/GO_0006096Removed
glycolytic process EquivalentTo carbohydrate catabolic process and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity) and (ends with some pyruvate kinase activity) and (has input some NAD(P)(+)) and (has input some ADP(3-)) and (has output some NAD(P)H) and (has output some ATP(4-)) and (has primary output some pyruvate)
glycolytic process SubClassOf has output some ATP(4-)
glycolytic process SubClassOf has output some NAD(P)H
Added
glycolytic process EquivalentTo carbohydrate catabolic process and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity) and (ends with some pyruvate kinase activity) and (has input some NAD(P)(+)) and (has input some ADP(3-)) and (has primary output some NAD(P)H) and (has primary output some pyruvate) and (has primary output some ATP(4-))
glycolytic process SubClassOf has primary output some ATP(4-)
glycolytic process SubClassOf has primary output some NAD(P)H
glycolytic process SubClassOf ATP metabolic process
glycolytic process SubClassOf nicotinamide nucleotide metabolic process
guanine salvage
http://purl.obolibrary.org/obo/GO_0006178Removed
guanine salvage EquivalentTo cellular metabolic compound salvage and (has output some guanine)
guanine salvage SubClassOf has output some guanine
Added
guanosine salvage
http://purl.obolibrary.org/obo/GO_0006179Removed
guanosine salvage EquivalentTo cellular metabolic compound salvage and (has output some guanosine)
guanosine salvage SubClassOf has output some guanosine
Added
hypoxanthine salvage
http://purl.obolibrary.org/obo/GO_0043103Removed
hypoxanthine salvage EquivalentTo cellular metabolic compound salvage and (has output some hypoxanthine)
hypoxanthine salvage SubClassOf has output some hypoxanthine
Added
inosine salvage
http://purl.obolibrary.org/obo/GO_0006190Removed
inosine salvage EquivalentTo cellular metabolic compound salvage and (has output some inosine)
inosine salvage SubClassOf has output some inosine
Added
iron-sulfur cluster assembly
http://purl.obolibrary.org/obo/GO_0016226Removed
iron-sulfur cluster assembly EquivalentTo cellular component assembly and (has output some iron-sulfur cluster)
iron-sulfur cluster assembly SubClassOf has output some iron-sulfur cluster
Added
iron-sulfur cluster assembly EquivalentTo cellular component assembly and (has primary output some iron-sulfur cluster)
iron-sulfur cluster assembly SubClassOf has primary output some iron-sulfur cluster
mannose to fructose-6-phosphate metabolic process
http://purl.obolibrary.org/obo/GO_0061611Removed
mannose to fructose-6-phosphate metabolic process EquivalentTo metabolic process and (starts with some mannokinase activity) and (ends with some mannose-6-phosphate isomerase activity) and (has input some mannose) and (has output some D-fructose 6-phosphate(2-))
mannose to fructose-6-phosphate metabolic process SubClassOf has output some D-fructose 6-phosphate(2-)
Added
mannose to fructose-6-phosphate metabolic process EquivalentTo metabolic process and (starts with some mannokinase activity) and (ends with some mannose-6-phosphate isomerase activity) and (has input some mannose) and (has primary output some D-fructose 6-phosphate(2-))
mannose to fructose-6-phosphate metabolic process SubClassOf has primary output some D-fructose 6-phosphate(2-)
mannose to fructose-6-phosphate metabolic process SubClassOf fructose 6-phosphate metabolic process
membrane biogenesis
http://purl.obolibrary.org/obo/GO_0044091Removed
membrane biogenesis EquivalentTo cellular component biogenesis and (has output some membrane)
membrane biogenesis SubClassOf has output some membrane
Added
membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some membrane)
membrane biogenesis SubClassOf has primary output some membrane
metallo-sulfur cluster assembly
http://purl.obolibrary.org/obo/GO_0031163Removed
metallo-sulfur cluster assembly EquivalentTo cellular component assembly and (has output some metal-sulfur cluster)
metallo-sulfur cluster assembly SubClassOf has output some metal-sulfur cluster
Added
metallo-sulfur cluster assembly EquivalentTo cellular component assembly and (has primary output some metal-sulfur cluster)
metallo-sulfur cluster assembly SubClassOf has primary output some metal-sulfur cluster
mixed acid fermentation
http://purl.obolibrary.org/obo/GO_0019664Removed
mixed acid fermentation EquivalentTo glycolytic fermentation and (has input some glucose) and (has output some formate) and (has output some ethanol) and (has output some 2-oxoglutarate(2-)) and (has output some lactate) and (has output some succinate(2-)) and (has output some acetate)
mixed acid fermentation SubClassOf has output some 2-oxoglutarate(2-)
mixed acid fermentation SubClassOf has output some lactate
mixed acid fermentation SubClassOf has output some succinate(2-)
mixed acid fermentation SubClassOf has output some ethanol
mixed acid fermentation SubClassOf has output some formate
mixed acid fermentation SubClassOf has output some acetate
Added
mixed acid fermentation EquivalentTo glycolytic fermentation and (has input some glucose) and (has primary output some formate) and (has primary output some ethanol) and (has primary output some 2-oxoglutarate(2-)) and (has primary output some lactate) and (has primary output some succinate(2-)) and (has primary output some acetate)
mixed acid fermentation SubClassOf formate metabolic process
mixed acid fermentation SubClassOf lactate metabolic process
mixed acid fermentation SubClassOf has primary output some acetate
mixed acid fermentation SubClassOf has primary output some formate
mixed acid fermentation SubClassOf acetate metabolic process
mixed acid fermentation SubClassOf ethanol metabolic process
mixed acid fermentation SubClassOf has primary output some succinate(2-)
mixed acid fermentation SubClassOf has primary output some ethanol
mixed acid fermentation SubClassOf 2-oxoglutarate metabolic process
mixed acid fermentation SubClassOf has primary output some lactate
mixed acid fermentation SubClassOf has primary output some 2-oxoglutarate(2-)
mixed acid fermentation SubClassOf succinate metabolic process
negative regulation of glycolytic fermentation to ethanol
http://purl.obolibrary.org/obo/GO_2001155Added
negative regulation of glycolytic process
http://purl.obolibrary.org/obo/GO_0045820Removed
negative regulation of glycolytic process SubClassOf negative regulation of cellular metabolic process
negative regulation of glycolytic process SubClassOf negative regulation of small molecule metabolic process
Added
nicotinate nucleotide salvage
http://purl.obolibrary.org/obo/GO_0019358Removed
nicotinate nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some nicotinic acid nucleotide)
nicotinate nucleotide salvage SubClassOf has output some nicotinic acid nucleotide
Added
nitric oxide production involved in inflammatory response
http://purl.obolibrary.org/obo/GO_0002537Removed
Added
nuclear membrane biogenesis
http://purl.obolibrary.org/obo/GO_0101025Removed
nuclear membrane biogenesis EquivalentTo cellular component biogenesis and (has output some nuclear membrane)
nuclear membrane biogenesis SubClassOf has output some nuclear membrane
Added
nuclear membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some nuclear membrane)
nuclear membrane biogenesis SubClassOf has primary output some nuclear membrane
nucleologenesis
http://purl.obolibrary.org/obo/GO_0017126Removed
nucleologenesis EquivalentTo cellular component biogenesis and (has output some nucleolus)
nucleologenesis SubClassOf has output some nucleolus
Added
nucleologenesis EquivalentTo cellular component biogenesis and (has primary output some nucleolus)
nucleologenesis SubClassOf has primary output some nucleolus
nucleoside salvage
http://purl.obolibrary.org/obo/GO_0043174Removed
nucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some nucleoside)
nucleoside salvage SubClassOf has output some nucleoside
Added
nucleotide salvage
http://purl.obolibrary.org/obo/GO_0043173Removed
nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some nucleotide)
nucleotide salvage SubClassOf has output some nucleotide
Added
pentose-phosphate shunt
http://purl.obolibrary.org/obo/GO_0006098Removed
Added
pentose-phosphate shunt, non-oxidative branch
http://purl.obolibrary.org/obo/GO_0009052Removed
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has part some D-ribulose-phosphate 3-epimerase activity) and (has part some ribose-5-phosphate isomerase activity) and (has part some transaldolase activity) and (has part some transketolase activity) and (has input some D-ribose 5-phosphate) and (has output some glyceraldehyde 3-phosphate(2-)) and (has output some D-fructose 6-phosphate)
pentose-phosphate shunt, non-oxidative branch SubClassOf has output some D-fructose 6-phosphate
pentose-phosphate shunt, non-oxidative branch SubClassOf has output some glyceraldehyde 3-phosphate(2-)
Added
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has part some D-ribulose-phosphate 3-epimerase activity) and (has part some ribose-5-phosphate isomerase activity) and (has part some transaldolase activity) and (has part some transketolase activity) and (has input some D-ribose 5-phosphate) and (has primary output some glyceraldehyde 3-phosphate(2-)) and (has primary output some D-fructose 6-phosphate)
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some D-fructose 6-phosphate
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some glyceraldehyde 3-phosphate(2-)
pentose-phosphate shunt, non-oxidative branch SubClassOf glyceraldehyde-3-phosphate metabolic process
pentose-phosphate shunt, oxidative branch
http://purl.obolibrary.org/obo/GO_0009051Removed
Added
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine
http://purl.obolibrary.org/obo/GO_0018396Removed
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine EquivalentTo peptidyl-lysine hydroxylation and (has output some 4-hydroxy-L-lysine(1+))
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf has output some 4-hydroxy-L-lysine(1+)
Added
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine EquivalentTo peptidyl-lysine hydroxylation and (has primary output some 4-hydroxy-L-lysine(1+))
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf has primary output some 4-hydroxy-L-lysine(1+)
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf alpha-amino acid metabolic process
peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine SubClassOf cellular modified amino acid metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline
http://purl.obolibrary.org/obo/GO_0018400Removed
peptidyl-proline hydroxylation to 3-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has output some 3-hydroxy-L-proline)
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf has output some 3-hydroxy-L-proline
Added
peptidyl-proline hydroxylation to 3-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has primary output some 3-hydroxy-L-proline)
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf alpha-amino acid metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf cellular modified amino acid metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf has primary output some 3-hydroxy-L-proline
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf organic cyclic compound metabolic process
peptidyl-proline hydroxylation to 3-hydroxy-L-proline SubClassOf heterocycle metabolic process
peptidyl-proline hydroxylation to 4-hydroxy-L-proline
http://purl.obolibrary.org/obo/GO_0018401Removed
peptidyl-proline hydroxylation to 4-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has output some 4-hydroxy-L-proline zwitterion)
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf has output some 4-hydroxy-L-proline zwitterion
Added
peptidyl-proline hydroxylation to 4-hydroxy-L-proline EquivalentTo peptidyl-proline hydroxylation and (has primary output some 4-hydroxy-L-proline zwitterion)
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf has primary output some 4-hydroxy-L-proline zwitterion
peptidyl-proline hydroxylation to 4-hydroxy-L-proline SubClassOf 4-hydroxyproline metabolic process
peroxisome membrane biogenesis
http://purl.obolibrary.org/obo/GO_0016557Removed
peroxisome membrane biogenesis EquivalentTo cellular component biogenesis and (has output some peroxisomal membrane)
peroxisome membrane biogenesis SubClassOf has output some peroxisomal membrane
Added
peroxisome membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some peroxisomal membrane)
peroxisome membrane biogenesis SubClassOf has primary output some peroxisomal membrane
phytol salvage
http://purl.obolibrary.org/obo/GO_0033307Removed
phytol salvage EquivalentTo cellular metabolic compound salvage and (has output some phytol)
phytol salvage SubClassOf has output some phytol
Added
positive regulation of glycolytic fermentation to ethanol
http://purl.obolibrary.org/obo/GO_2001172Added
positive regulation of glycolytic process
http://purl.obolibrary.org/obo/GO_0045821Removed
Added
primary cell septum biogenesis
http://purl.obolibrary.org/obo/GO_0031671Removed
primary cell septum biogenesis EquivalentTo cellular component biogenesis and (has output some primary cell septum)
primary cell septum biogenesis SubClassOf has output some primary cell septum
Added
primary cell septum biogenesis EquivalentTo cellular component biogenesis and (has primary output some primary cell septum)
primary cell septum biogenesis SubClassOf has primary output some primary cell septum
proline salvage
http://purl.obolibrary.org/obo/GO_0019492Removed
proline salvage EquivalentTo cellular metabolic compound salvage and (has output some prolinate)
proline salvage SubClassOf has output some prolinate
Added
purine deoxyribonucleoside salvage
http://purl.obolibrary.org/obo/GO_0043098Removed
purine deoxyribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some purine deoxyribonucleoside)
purine deoxyribonucleoside salvage SubClassOf has output some purine deoxyribonucleoside
Added
purine nucleobase salvage
http://purl.obolibrary.org/obo/GO_0043096Removed
purine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has output some purine nucleobase)
purine nucleobase salvage SubClassOf has output some purine nucleobase
Added
purine ribonucleoside salvage
http://purl.obolibrary.org/obo/GO_0006166Removed
purine ribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some purine ribonucleoside)
purine ribonucleoside salvage SubClassOf has output some purine ribonucleoside
Added
purine-containing compound salvage
http://purl.obolibrary.org/obo/GO_0043101Removed
purine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has output some purines)
purine-containing compound salvage SubClassOf has output some purines
Added
pyridine nucleotide salvage
http://purl.obolibrary.org/obo/GO_0019365Removed
pyridine nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyridine nucleotide)
pyridine nucleotide salvage SubClassOf has output some pyridine nucleotide
Added
pyridoxal 5'-phosphate salvage
http://purl.obolibrary.org/obo/GO_0009443Removed
pyridoxal 5'-phosphate salvage EquivalentTo cellular metabolic compound salvage and (has output some pyridoxal 5'-phosphate(2-))
pyridoxal 5'-phosphate salvage SubClassOf has output some pyridoxal 5'-phosphate(2-)
Added
pyrimidine deoxyribonucleoside salvage
http://purl.obolibrary.org/obo/GO_0043099Removed
pyrimidine deoxyribonucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine 2'-deoxyribonucleoside)
pyrimidine deoxyribonucleoside salvage SubClassOf has output some pyrimidine 2'-deoxyribonucleoside
Added
pyrimidine deoxyribonucleotide salvage
http://purl.obolibrary.org/obo/GO_0010139Removed
pyrimidine deoxyribonucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine 2'-deoxyribonucleotide)
pyrimidine deoxyribonucleotide salvage SubClassOf has output some pyrimidine 2'-deoxyribonucleotide
Added
pyrimidine nucleobase salvage
http://purl.obolibrary.org/obo/GO_0043100Removed
pyrimidine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleobase)
pyrimidine nucleobase salvage SubClassOf has output some pyrimidine nucleobase
Added
pyrimidine nucleobase salvage EquivalentTo cellular metabolic compound salvage and (has primary output some pyrimidine nucleobase)
pyrimidine nucleobase salvage SubClassOf pyrimidine nucleobase biosynthetic process
pyrimidine nucleoside salvage
http://purl.obolibrary.org/obo/GO_0043097Removed
pyrimidine nucleoside salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleoside)
pyrimidine nucleoside salvage SubClassOf has output some pyrimidine nucleoside
Added
pyrimidine nucleotide salvage
http://purl.obolibrary.org/obo/GO_0032262Removed
pyrimidine nucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine nucleotide)
pyrimidine nucleotide salvage SubClassOf has output some pyrimidine nucleotide
Added
pyrimidine ribonucleotide salvage
http://purl.obolibrary.org/obo/GO_0010138Removed
pyrimidine ribonucleotide salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidine ribonucleotide)
pyrimidine ribonucleotide salvage SubClassOf has output some pyrimidine ribonucleotide
Added
pyrimidine-containing compound salvage
http://purl.obolibrary.org/obo/GO_0008655Removed
pyrimidine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has output some pyrimidines)
pyrimidine-containing compound salvage SubClassOf has output some pyrimidines
Added
pyrimidine-containing compound salvage EquivalentTo cellular metabolic compound salvage and (has primary output some pyrimidines)
pyrimidine-containing compound salvage SubClassOf pyrimidine-containing compound biosynthetic process
queuosine salvage
http://purl.obolibrary.org/obo/GO_1990397Removed
queuosine salvage EquivalentTo cellular metabolic compound salvage and (has output some queuosine)
queuosine salvage SubClassOf has output some queuosine
Added
regulation of glycolytic fermentation to ethanol
http://purl.obolibrary.org/obo/GO_2001154Added
regulation of glycolytic process
http://purl.obolibrary.org/obo/GO_0006110Removed
Added
rhabdomere membrane biogenesis
http://purl.obolibrary.org/obo/GO_0045313Removed
rhabdomere membrane biogenesis EquivalentTo cellular component biogenesis and (has output some rhabdomere membrane)
rhabdomere membrane biogenesis SubClassOf has output some rhabdomere membrane
Added
rhabdomere membrane biogenesis EquivalentTo cellular component biogenesis and (has primary output some rhabdomere membrane)
rhabdomere membrane biogenesis SubClassOf has primary output some rhabdomere membrane
secondary cell septum biogenesis
http://purl.obolibrary.org/obo/GO_1990344Removed
secondary cell septum biogenesis EquivalentTo cellular component biogenesis and (has output some secondary cell septum)
secondary cell septum biogenesis SubClassOf has output some secondary cell septum
Added
secondary cell septum biogenesis EquivalentTo cellular component biogenesis and (has primary output some secondary cell septum)
secondary cell septum biogenesis SubClassOf has primary output some secondary cell septum
snoRNA release from pre-rRNA
http://purl.obolibrary.org/obo/GO_1990417Removed
Added
snoRNA release from pre-rRNA SubClassOf sno(s)RNA metabolic process
snoRNA release from pre-rRNA SubClassOf has primary output some snoRNA
steroid hormone biosynthetic process
http://purl.obolibrary.org/obo/GO_0120178Removed
steroid hormone biosynthetic process EquivalentTo steroid biosynthetic process and (has output some steroid hormone)
steroid hormone biosynthetic process SubClassOf has output some steroid hormone
Added
steroid hormone biosynthetic process EquivalentTo steroid biosynthetic process and (has primary output some steroid hormone)
steroid hormone biosynthetic process SubClassOf has primary output some steroid hormone
sulphoglycolysis
http://purl.obolibrary.org/obo/GO_0061722Removed
sulphoglycolysis EquivalentTo catabolic process and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity) and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some triose-phosphate isomerase activity) and (has participant some ADP(3-)) and (has participant some NAD(1-)) and (starts with some 6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde) and (ends with some pyruvate kinase activity) and (has output some pyruvate) and (has output some ATP(4-)) and (has output some NADH(2-)) and (has primary input some 6-sulfo-D-quinovose(1-))
sulphoglycolysis SubClassOf has output some NADH(2-)
sulphoglycolysis SubClassOf has output some ATP(4-)
sulphoglycolysis SubClassOf has output some pyruvate
Added
sulphoglycolysis EquivalentTo catabolic process and (has part some glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity) and (has part some phosphoglycerate kinase activity) and (has part some phosphoglycerate mutase activity) and (has part some phosphopyruvate hydratase activity) and (has part some triose-phosphate isomerase activity) and (has participant some ADP(3-)) and (has participant some NAD(1-)) and (starts with some 6-sulfoquinovose(1-) catabolic process to glycerone phosphate and 3-sulfolactaldehyde) and (ends with some pyruvate kinase activity) and (has primary output some pyruvate) and (has primary output some ATP(4-)) and (has primary output some NADH(2-)) and (has primary input some 6-sulfo-D-quinovose(1-))
sulphoglycolysis SubClassOf has primary output some NADH(2-)
sulphoglycolysis SubClassOf has primary output some ATP(4-)
sulphoglycolysis SubClassOf ATP metabolic process
sulphoglycolysis SubClassOf has primary output some pyruvate
sulphoglycolysis SubClassOf pyruvate metabolic process
sulphoglycolysis SubClassOf NADH metabolic process
synaptic vesicle budding
http://purl.obolibrary.org/obo/GO_0070142Removed
synaptic vesicle budding EquivalentTo vesicle budding from membrane and (has output some synaptic vesicle)
synaptic vesicle budding SubClassOf has output some synaptic vesicle
Added
synaptic vesicle budding EquivalentTo vesicle budding from membrane and (has primary output some synaptic vesicle)
synaptic vesicle budding SubClassOf has primary output some synaptic vesicle
thiamine salvage
http://purl.obolibrary.org/obo/GO_0036172Removed
thiamine salvage EquivalentTo cellular metabolic compound salvage and (has output some thiamine(1+))
thiamine salvage SubClassOf has output some thiamine(1+)
Added
toluene oxidation to catechol
http://purl.obolibrary.org/obo/GO_0019604Removed
toluene oxidation to catechol EquivalentTo toluene oxidation and (has output some catechol)
toluene oxidation to catechol SubClassOf has output some catechol
Added
toluene oxidation to catechol EquivalentTo toluene oxidation and (has primary output some catechol)
toluene oxidation to catechol SubClassOf has primary output some catechol
uracil salvage
http://purl.obolibrary.org/obo/GO_0006223Removed
uracil salvage EquivalentTo cellular metabolic compound salvage and (has output some uracil)
uracil salvage SubClassOf has output some uracil
Added
uracil salvage EquivalentTo cellular metabolic compound salvage and (has primary output some uracil)