obsoleted terms fixes #22246

src/ontology/go-edit.obo

@@ -521,11 +521,11 @@ synonym: "ribosomal subunit transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "ribosomal subunit-nucleus export" EXACT [GOC:mah]
 synonym: "ribosome export from nucleus" RELATED [GOC:mah, GOC:rb]
 is_a: GO:0033750 ! ribosome localization
-is_a: GO:0071428 ! rRNA-containing ribonucleoprotein complex export from nucleus
 intersection_of: GO:0006810 ! transport
 intersection_of: exports GO:0044391 ! ribosomal subunit
-intersection_of: has_target_end_location GO:0005737 ! cytoplasm
-intersection_of: has_target_start_location GO:0005634 ! nucleus
+intersection_of: has_target_end_location GO:0005829 ! cytosol
+intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
+intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
 relationship: part_of GO:0042254 ! ribosome biogenesis
 
 [Term]
@@ -542,8 +542,8 @@ synonym: "ribosomal large subunit transport from nucleus to cytoplasm" EXACT []
 synonym: "ribosomal large subunit-nucleus export" EXACT []
 intersection_of: GO:0006810 ! transport
 intersection_of: exports GO:0015934 ! large ribosomal subunit
-intersection_of: has_target_end_location GO:0005737 ! cytoplasm
-intersection_of: has_target_start_location GO:0005634 ! nucleus
+intersection_of: has_target_end_location GO:0005829 ! cytosol
+intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
 
 [Term]
 id: GO:0000056
@@ -559,8 +559,8 @@ synonym: "ribosomal small subunit transport from nucleus to cytoplasm" EXACT []
 synonym: "ribosomal small subunit-nucleus export" EXACT []
 intersection_of: GO:0006810 ! transport
 intersection_of: exports GO:0015935 ! small ribosomal subunit
-intersection_of: has_target_end_location GO:0005737 ! cytoplasm
-intersection_of: has_target_start_location GO:0005634 ! nucleus
+intersection_of: has_target_end_location GO:0005829 ! cytosol
+intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
 
 [Term]
 id: GO:0000059
@@ -61190,7 +61190,6 @@ intersection_of: has_target_end_location GO:0005829 ! cytosol
 intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
 intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
 relationship: part_of GO:0010467 ! gene expression
-relationship: part_of GO:0071427 ! mRNA-containing ribonucleoprotein complex export from nucleus
 
 [Term]
 id: GO:0006407
@@ -61207,7 +61206,6 @@ intersection_of: has_target_end_location GO:0005829 ! cytosol
 intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
 intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
 relationship: part_of GO:0042254 ! ribosome biogenesis
-relationship: part_of GO:0071428 ! rRNA-containing ribonucleoprotein complex export from nucleus
 
 [Term]
 id: GO:0006408
@@ -61238,7 +61236,6 @@ intersection_of: exports CHEBI:17843 ! transfer RNA
 intersection_of: has_target_end_location GO:0005829 ! cytosol
 intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
 intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
-relationship: part_of GO:0071431 ! tRNA-containing ribonucleoprotein complex export from nucleus
 
 [Term]
 id: GO:0006410
@@ -375921,87 +375918,88 @@ creation_date: 2009-12-16T10:22:52Z
 
 [Term]
 id: GO:0071426
-name: ribonucleoprotein complex export from nucleus
+name: obsolete ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex from the nucleus to the cytoplasm." [GOC:mah]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex from the nucleus to the cytoplasm." [GOC:mah]
+comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
 synonym: "ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "RNP export from nucleus" EXACT [GOC:mah]
-intersection_of: GO:0006810 ! transport
-intersection_of: exports GO:1990904 ! ribonucleoprotein complex
-intersection_of: has_target_end_location GO:0005829 ! cytosol
-intersection_of: has_target_start_location GO:0031981 ! nuclear lumen
-intersection_of: results_in_transport_across GO:0005635 ! nuclear envelope
-relationship: part_of GO:0071166 ! ribonucleoprotein complex localization
+is_obsolete: true
 created_by: mah
 creation_date: 2009-12-16T10:13:01Z
 
 [Term]
 id: GO:0071427
-name: mRNA-containing ribonucleoprotein complex export from nucleus
+name: obsolete mRNA-containing ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm." [GOC:mah]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm." [GOC:mah]
+comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
 synonym: "mRNA-containing ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "mRNA-containing ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "mRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "mRNA-containing RNP export from nucleus" EXACT [GOC:mah]
-is_a: GO:0071426 ! ribonucleoprotein complex export from nucleus
+is_obsolete: true
+consider: GO:0006406
 created_by: mah
 creation_date: 2009-12-16T10:13:59Z
 
 [Term]
 id: GO:0071428
-name: rRNA-containing ribonucleoprotein complex export from nucleus
+name: obsolete rRNA-containing ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex that contains ribosomal RNA from the nucleus to the cytoplasm." [GOC:mah]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex that contains ribosomal RNA from the nucleus to the cytoplasm." [GOC:mah]
+comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
 synonym: "rRNA-containing ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "rRNA-containing ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "rRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "rRNA-containing RNP export from nucleus" EXACT [GOC:mah]
-is_a: GO:0071426 ! ribonucleoprotein complex export from nucleus
+is_obsolete: true
 created_by: mah
 creation_date: 2009-12-16T10:15:07Z
 
 [Term]
 id: GO:0071429
-name: snRNA-containing ribonucleoprotein complex export from nucleus
+name: obsolete snRNA-containing ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm." [GOC:mah]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm." [GOC:mah]
+comment: This term has been obsoleted because it represents a process and its substrate.
 synonym: "snRNA-containing ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "snRNA-containing ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "snRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "snRNA-containing RNP export from nucleus" EXACT [GOC:mah]
-is_a: GO:0071426 ! ribonucleoprotein complex export from nucleus
-relationship: has_part GO:0006408 ! snRNA export from nucleus
+is_obsolete: true
 created_by: mah
 creation_date: 2009-12-16T10:15:38Z
 
 [Term]
 id: GO:0071430
-name: pre-miRNA-containing ribonucleoprotein complex export from nucleus
+name: obsolete pre-miRNA-containing ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex that contains pre-microRNA from the nucleus to the cytoplasm." [GOC:mah, GOC:sl]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex that contains pre-microRNA from the nucleus to the cytoplasm." [GOC:mah, GOC:sl]
+comment: This term has been obsoleted because it represents a process and its substrate.
 synonym: "pre-microRNA-containing ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "pre-microRNA-containing ribonucleoprotein complex export from nucleus" EXACT []
 synonym: "pre-microRNA-containing ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "pre-microRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "pre-microRNA-containing RNP export from nucleus" EXACT [GOC:mah]
-is_a: GO:0071426 ! ribonucleoprotein complex export from nucleus
-relationship: has_part GO:0035281 ! pre-miRNA export from nucleus
+is_obsolete: true
 created_by: mah
 creation_date: 2009-12-16T10:26:16Z
 
 [Term]
 id: GO:0071431
-name: tRNA-containing ribonucleoprotein complex export from nucleus
+name: obsolete tRNA-containing ribonucleoprotein complex export from nucleus
 namespace: biological_process
-def: "The directed movement of a ribonucleoprotein complex that contains transfer RNA from the nucleus to the cytoplasm." [GOC:mah]
+def: "OBSOLETE. The directed movement of a ribonucleoprotein complex that contains transfer RNA from the nucleus to the cytoplasm." [GOC:mah]
+comment: This term has been obsoleted because it represents the transport of a carrier bound to its substrate.
 synonym: "tRNA-containing ribonucleoprotein complex export from cell nucleus" EXACT [GOC:mah]
 synonym: "tRNA-containing ribonucleoprotein complex nucleus export" EXACT [GOC:mah]
 synonym: "tRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm" EXACT [GOC:mah]
 synonym: "tRNA-containing RNP export from nucleus" EXACT [GOC:mah]
-is_a: GO:0071426 ! ribonucleoprotein complex export from nucleus
+is_obsolete: true
+consider: GO:0051168
 created_by: mah
 creation_date: 2009-12-16T10:27:03Z