protein C-terminus binding GO:0008022

[Antonialock]

Please provide as much information as you can:

• GO term ID and Label
  protein C-terminus binding GO:0008022

• Reason for deprecation
  is this in scope?

• Are there annotations to this term?

• How many EXP:
  404

[pgaudet]

Likewise for GO:0047485 protein N-terminus binding
168 EXP

We could use 'replace_by' protein binding (GO:0005515); the annotations with no 'with' will be filtered.

[raymond91125]

I would like to confirm that we support annotation of protein binding (to a specific gene product) but not protein N/C-terminus binding (to the same specific gene). Don't these terms work well for some more general, not gene-specific binding, e.g. chaperones?

[raymond91125]

@pgaudet How do we remove protein C-terminus binding GO:0008022 from goslim_chembl? Thanks.

[raymond91125]

@BZdrazil please note.

[raymond91125]

Obsoletion request: GO:0008022 protein C-terminus binding

• Reason for deprecation:

  • The reason for obsoletion is that this term is beyond the scope of GO.

• "Replace by" GO:0005515 protein binding

• Are there annotations to this term?

• How many EXP:

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

• Is this term in a subset? (check the AmiGO page for that term)

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Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• find external mappings (via IEAS), include in obsoletion notice
• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends (go-friends@mailman.stanford.edu)
• paste the text in the ontology ticket

[raymond91125]

Should we these (C-, N-, N- myristoylation) obsoletions as 'merging' (with replaced by GO:0005515 protein binding) with no annotation review?

[pgaudet]

Should we these (C-, N-, N- myristoylation) obsoletions as 'merging' (with replaced by GO:0005515 protein binding)

I agree

with no annotation review?

It would be nice to nevertheless create the annotation list to allow people to check their annotations if they want. OK ?