YeastPathways import: "source: null:*pathway-name" instead of "source: SGD:*pathway-name*"

[suzialeksander]

Spotchecking these YeastPathways models, and for Evidencethe source field for the CC term "occurs in (cytosol)" has a null: prefix before whatever pathway name:

Same for other models, like http://noctua-dev.berkeleybop.org/editor/graph/gomodel:PWY3O-123? - the green evidence box on the cytosol term has the null: prefix. In the same model, the Evidence fields for the rest of the bits are fine, and show source: SGD:SERSYN-PWY or whatever the pathway is.

@dustine32

[suzialeksander]

[dustine32]

The source field issue should be handled once #126 is solved.

[dustine32]

Oh, I see now there's a conditional that sets source prefix depending on providedBy value and the case for SGD didn't match what we were currently supplying:

pathways2GO/exchange/src/main/java/org/geneontology/gocam/exchange/GoCAM.java

Line 209 in 63b853a

}else if(base_provider.equals("https://yeastcyc.org")) {

AFAIK this discrepancy was only occuring for rule-inferred edges. I'll fix it by changing the conditional value to https://yeastgenome.org.

[suzialeksander]

Fixed!