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Projection to closed curves #1015

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Projection to closed curves #1015

wants to merge 254 commits into from
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Commits on Jan 20, 2021

  1. Correct irrelevant function call.

    @ythanwerdas
    ythanwerdas committed Jan 20, 2021
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Commits on Apr 14, 2021

  1. Geodesics between simple shapes

    @Florent-Michel
    Florent-Michel committed Apr 14, 2021
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Commits on Apr 15, 2021

  1. add test, remove not working code

    @Florent-Michel
    Florent-Michel committed Apr 15, 2021
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Commits on Apr 22, 2021

  1. Merge branch 'master' of https://github.com/geomstats/geomstats

    @Florent-Michel
    Florent-Michel committed Apr 22, 2021
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  2. Add cell data and analysis of cells

    @Florent-Michel
    Florent-Michel committed Apr 22, 2021
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  3. Fix style

    @Florent-Michel
    Florent-Michel committed Apr 22, 2021
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  4. loop with enumerate

    @Florent-Michel
    Florent-Michel committed Apr 22, 2021
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Commits on Apr 24, 2021

  1. Merge branch 'master' of https://github.com/geomstats/geomstats

    @Florent-Michel
    Florent-Michel committed Apr 24, 2021
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Commits on Apr 28, 2021

  1. Merge branch 'master' of https://github.com/geomstats/geomstats

    @Florent-Michel
    Florent-Michel committed Apr 28, 2021
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Commits on May 17, 2021

  1. first commit for lognormal sampler

    @SaitejaUtpala
    SaitejaUtpala committed May 17, 2021
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  2. checks for values in init in sampler

    @SaitejaUtpala
    SaitejaUtpala committed May 17, 2021
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Commits on May 18, 2021

  1. vectorize code heavily

    @SaitejaUtpala
    SaitejaUtpala committed May 18, 2021
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  2. fixed some issues

    @SaitejaUtpala
    SaitejaUtpala committed May 18, 2021
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  3. corrected import statements

    @SaitejaUtpala
    SaitejaUtpala committed May 18, 2021
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  4. add sampling for Euclidean space

    @SaitejaUtpala
    SaitejaUtpala committed May 18, 2021
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Commits on May 19, 2021

  1. fix off diag bug

    @SaitejaUtpala
    SaitejaUtpala committed May 19, 2021
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  2. add references and Exception handling

    @SaitejaUtpala
    SaitejaUtpala committed May 19, 2021
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  3. add ABC to base classes

    @nguigs
    nguigs committed May 19, 2021
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  4. introduce open set abstract class

    @nguigs
    nguigs committed May 19, 2021
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  5. metric as property

    @nguigs
    nguigs committed May 19, 2021
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  6. harmonize metric property + test_projection_and_belongs for embedded … 

    …manifolds
    @nguigs
    nguigs committed May 19, 2021
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  7. total space identified with fiber bundle

    @nguigs
    nguigs committed May 19, 2021
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  8. docstrings

    @nguigs
    nguigs committed May 19, 2021
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  9. adapt grassmannian, dirichlet, poincare_half_space and discrete curves

    @nguigs
    nguigs committed May 19, 2021
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Commits on May 20, 2021

  1. add diag indices to backend

    @SaitejaUtpala
    SaitejaUtpala committed May 20, 2021
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Commits on May 23, 2021

  1. minor adjustments

    @SaitejaUtpala
    SaitejaUtpala committed May 23, 2021
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Commits on May 26, 2021

  1. discrete curves as manifold

    @nguigs
    nguigs committed May 26, 2021
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  2. deal with embedded manifolds

    @nguigs
    nguigs committed May 26, 2021
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  3. address comments

    @nguigs
    nguigs committed May 26, 2021
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  4. change import prod

    @nguigs
    nguigs committed May 26, 2021
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  5. fix imports and tests

    @nguigs
    nguigs committed May 26, 2021
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Commits on May 27, 2021

  1. add matrix lie groups

    @nguigs
    nguigs committed May 27, 2021
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  2. docstrings

    @nguigs
    nguigs committed May 27, 2021
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  3. remove regularize method in hypersphere

    @nguigs
    nguigs committed May 27, 2021
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Commits on May 28, 2021

  1. common interface to hyperbolic spaces

    @nguigs
    nguigs committed May 28, 2021
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  2. fix prod for other backends

    @nguigs
    nguigs committed May 28, 2021
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  3. make tests pass again

    @nguigs
    nguigs committed May 28, 2021
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  4. address DeepSource and rename embedded_manifold.py to base.py

    @nguigs
    nguigs committed May 28, 2021
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  5. DeepSource 2

    @nguigs
    nguigs committed May 28, 2021
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  6. DeepSource 3

    @nguigs
    nguigs committed May 28, 2021
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  7. Merge branch 'master' of https://github.com/geomstats/geomstats

    @Florent-Michel
    Florent-Michel committed May 28, 2021
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  8. Merge branch 'master' of https://github.com/geomstats/geomstats

    @Florent-Michel
    Florent-Michel committed May 28, 2021
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Commits on May 29, 2021

  1. Add projection to closed curves

    @Florent-Michel
    Florent-Michel committed May 29, 2021
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  2. delete empty notebook

    @Florent-Michel
    Florent-Michel committed May 29, 2021
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  3. Fix style

    @Florent-Michel
    Florent-Michel committed May 29, 2021
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Commits on May 31, 2021

  1. add test projection and belongs for hyperboloid and product manifold

    @nguigs
    nguigs committed May 31, 2021
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  2. change manifold type + intiate test

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  3. first commit for tests

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  4. test CI

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  5. fix in tests

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  6. fix regularisation

    @nguigs
    nguigs committed May 31, 2021
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  7. Deepsource and tol

    @nguigs
    nguigs committed May 31, 2021
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  8. DeepSource 2

    @nguigs
    nguigs committed May 31, 2021
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  9. DeepSource 3

    @nguigs
    nguigs committed May 31, 2021
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  10. fix-1

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  11. fix-2

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  12. add ABC to base classes

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  13. introduce open set abstract class

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  14. metric as property

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  15. harmonize metric property + test_projection_and_belongs for embedded … 

    …manifolds
    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  16. total space identified with fiber bundle

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  17. docstrings

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  18. adapt grassmannian, dirichlet, poincare_half_space and discrete curves

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  19. discrete curves as manifold

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  20. deal with embedded manifolds

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  21. address comments

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  22. change import prod

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  23. fix imports and tests

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  24. add matrix lie groups

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  25. docstrings

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  26. remove regularize method in hypersphere

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  27. common interface to hyperbolic spaces

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  28. fix prod for other backends

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  29. make tests pass again

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  30. address DeepSource and rename embedded_manifold.py to base.py

    @nguigs @ninamiolane
    nguigs authored and ninamiolane committed May 31, 2021
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  31. DeepSource 2

    @nguigs @ninamiolane
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  32. DeepSource 3

    @nguigs @ninamiolane
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  33. fix-3

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  34. fix return statement

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  35. fix-4

    @SaitejaUtpala
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  36. fix-5

    @SaitejaUtpala
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  37. fix normal

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  38. normal dist shape fix

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  39. add GL(n)+

    @nguigs
    nguigs committed May 31, 2021
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  40. lint-fix

    @SaitejaUtpala
    SaitejaUtpala committed May 31, 2021
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  41. Merge branch 'master' into nguigs-product 

    # Conflicts:
#	geomstats/geometry/dirichlet_distributions.py
#	geomstats/geometry/general_linear.py
#	geomstats/geometry/hyperboloid.py
#	geomstats/geometry/product_manifold.py
#	geomstats/geometry/spd_matrices.py
#	geomstats/geometry/special_euclidean.py
#	geomstats/geometry/special_orthogonal.py
#	tests/helper.py
#	tests/tests_geomstats/test_general_linear.py
#	tests/tests_geomstats/test_special_orthogonal.py
    @nguigs
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  42. fix rejection sampler

    @nguigs
    nguigs committed May 31, 2021
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Commits on Jun 1, 2021

  1. Update lognormal.py

    @SaitejaUtpala
    SaitejaUtpala committed Jun 1, 2021
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  2. Update lognormal.py

    @SaitejaUtpala
    SaitejaUtpala committed Jun 1, 2021
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  3. Update opt-requirements.txt

    @SaitejaUtpala
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  4. Update opt-requirements.txt

    @SaitejaUtpala
    SaitejaUtpala committed Jun 1, 2021
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  5. Update random.py

    @SaitejaUtpala
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  6. Update lognormal.py

    @SaitejaUtpala
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  7. Update lognormal.py

    @SaitejaUtpala
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  8. Update lognormal.py

    @SaitejaUtpala
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  9. Update lognormal.py

    @SaitejaUtpala
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  10. test to_tangent for product manifolds in matrix point_type

    @nguigs
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  11. linting

    @nguigs
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  12. Update lognormal.py

    @SaitejaUtpala
    SaitejaUtpala committed Jun 1, 2021
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  13. Update lognormal.py

    @SaitejaUtpala
    SaitejaUtpala committed Jun 1, 2021
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Commits on Jun 2, 2021

  1. make it work with tensorflow

    @SaitejaUtpala
    SaitejaUtpala committed Jun 2, 2021
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  2. backend correction

    @SaitejaUtpala
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  3. make it work with tensorflow

    @SaitejaUtpala
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  4. reshape fix

    @SaitejaUtpala
    SaitejaUtpala committed Jun 2, 2021
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  5. reshape fix

    @SaitejaUtpala
    SaitejaUtpala committed Jun 2, 2021
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  6. make it work with tensorflow

    @SaitejaUtpala
    SaitejaUtpala committed Jun 2, 2021
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  7. address review

    @nguigs
    nguigs committed Jun 2, 2021
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  8. Merge pull request geomstats#1016 from nguigs/nguigs-product 

    Add tests for product manifolds
    @nguigs
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  9. add tests for backend

    @SaitejaUtpala
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  10. Merge branch 'master' of https://github.com/geomstats/geomstats into … 

    …sampling
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  11. doc string changes

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  12. resolve merge conflict

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  13. doc string

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  14. trigger gh actions again

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  15. fix backend test

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  16. tf fix

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  17. tests-fix

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  18. Update test_lognormal.py

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  19. Update test_lognormal.py

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  20. Update lognormal.py

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  21. Update lognormal.py

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  22. Update lognormal.py

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  23. Update test_backends.py

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  24. Update test_backends.py

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  25. Update test_backends.py

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  26. Update __init__.py

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  27. Update test_backends.py

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  28. Update test_lognormal.py

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  29. Update __init__.py

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  30. Update __init__.py

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  31. Update __init__.py

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  32. Update lognormal.py

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  33. Update lognormal.py

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  34. Update random.py

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  35. Update test_backends.py

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  36. Update __init__.py

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  37. Update __init__.py

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  38. Update lognormal.py

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Commits on Jun 3, 2021

  1. Merge branch 'master' into full_rank_correlation_matrices 

    # Conflicts:
#	geomstats/geometry/spd_matrices.py
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  2. update branch

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  3. rewrite tangent_riemannian_submersion

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  4. fix vertical projection

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Commits on Jun 4, 2021

  1. make atts private

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  2. expand documentation

    @SaitejaUtpala
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  3. add more documentation

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  4. linting

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  5. linting in doc string

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Commits on Jun 5, 2021

  1. Add versions for matplotlib

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  2. Change matplotlib version

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Commits on Jun 6, 2021

  1. first commit

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  2. second commit

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Commits on Jun 7, 2021

  1. remove inheritance from SymmetricMatrices in SPD

    @nguigs
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  2. Make align and log work

    @nguigs
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  3. add all names in geometry.__init__

    @nguigs
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  4. remove all names in geometry.__init__

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  5. add point to horizontal_lift

    @nguigs
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Commits on Jun 8, 2021

  1. address review

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  2. Merge pull request geomstats#902 from ythanwerdas/full_rank_correlati… 

    …on_matrices

Full-rank correlation matrices
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  3. addressing review comments

    @SaitejaUtpala
    SaitejaUtpala committed Jun 8, 2021
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  4. linint issues

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  5. linting again

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  6. small correction in doc string

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  7. Merge pull request geomstats#1008 from SaitejaUtpala/sampling 

    Log Normal Sampler
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  8. Add isort and black as DeepSource transformers

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Commits on Jun 10, 2021

  1. move dist_broadcast and gmm_pdf methods

    @nguigs
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  2. move weighted_gmm_pdf

    @nguigs
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  3. DeepSource

    @nguigs
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  4. move other methods

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Commits on Jun 14, 2021

  1. add normalisation factor

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Commits on Jun 15, 2021

  1. Merge branch 'master' into update-pytorch-version

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Commits on Jun 16, 2021

  1. change erf for stability

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  2. pass n_jobs to metric

    @nguigs
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  3. pass n_jobs to metric 

    (cherry picked from commit 043e878)
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Commits on Jun 17, 2021

  1. Merge pull request geomstats#1030 from nguigs/nguigs-n_jobs 

    pass n_jobs to metric
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  2. Merge branch 'master' of github.com:nguigs/geomstats

    @nguigs
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  3. Add parallel transport on the grassmann manifold

    @nguigs
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  4. docstring

    @nguigs
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Commits on Jun 18, 2021

  1. debug ball estimator of frechet mean

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  2. linting

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Commits on Jun 19, 2021

  1. Merge pull request geomstats#1032 from nguigs/nguigs-grassmann-pt 

    Parallel transport on the Grassmann manifold
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Commits on Jun 20, 2021

  1. reformat and generalise ball estimator of frechet mean

    @nguigs
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  2. Merge branch 'update-pytorch-version' of https://github.com/SaitejaUt… 

    …pala/geomstats into update-pytorch-version
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  3. add comb to backend because not available before python 3.8

    @nguigs
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  4. Merge branch 'master' of https://github.com/geomstats/geomstats into … 

    …update-pytorch-version
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  5. minor adjustments

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  6. add allclose from torch

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  7. cleaning-1

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  8. cleaning-2

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  9. cleaning-3

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  10. cleaning-4

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  11. simplify

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  12. precision error

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  13. triu_indices

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  14. remove redefinition

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  15. minor adjust

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  16. revert to arcchosg

    @SaitejaUtpala
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  17. better error handling for pytorch

    @SaitejaUtpala
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  18. just trying with torch 1.9.0

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  19. revert

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  20. revert

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  21. test error again

    @SaitejaUtpala
    SaitejaUtpala committed Jun 20, 2021
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  22. fix typo

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    SaitejaUtpala committed Jun 20, 2021
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  23. debugging

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  24. debugging

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  25. debugging

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Commits on Jun 21, 2021

  1. testing with verbose option

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  2. change tolerance and check

    @SaitejaUtpala
    SaitejaUtpala committed Jun 21, 2021
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  3. and&or

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  4. add and back

    @SaitejaUtpala
    SaitejaUtpala committed Jun 21, 2021
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  5. add concatenate back

    @SaitejaUtpala
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  6. iterate

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  7. typo

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  8. add diagonal

    @SaitejaUtpala
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  9. trig funcs

    @SaitejaUtpala
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  10. modify trig functions

    @SaitejaUtpala
    SaitejaUtpala committed Jun 21, 2021
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  11. cleaning

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  12. better error messages for torch

    @SaitejaUtpala
    SaitejaUtpala committed Jun 21, 2021
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  13. verbose-22

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  14. boolean tensor

    @SaitejaUtpala
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  15. formatting

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Commits on Jun 22, 2021

  1. generalise batch gradient descent of frechet mean

    @nguigs
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  2. Merge branch 'nguigs-frachet-ball' into nguigs-em

    @nguigs
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  3. adapt notebook

    @nguigs
    nguigs committed Jun 22, 2021
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  4. Merge pull request geomstats#1026 from nguigs/nguigs-em 

    Generalise EM algorithm to hypersphere
    @nguigs
    nguigs committed Jun 22, 2021
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  5. improve vectors' visualisation on the disk and other small textual ch… 

    …anges
    @elodiemaignant @ninamiolane
    elodiemaignant authored and ninamiolane committed Jun 22, 2021
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  6. clear tol printing

    @elodiemaignant @ninamiolane
    elodiemaignant authored and ninamiolane committed Jun 22, 2021
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Commits on Jun 26, 2021

  1. FIX: README badge for build

    @ninamiolane
    ninamiolane committed Jun 26, 2021
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Commits on Jun 30, 2021

  1. Merge branch 'master' into update-pytorch-version

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  2. merge

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  3. merge commit

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  4. inc tol

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  5. linting

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  6. change random seed

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  7. increase tol

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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  8. import order inopt-req.txt

    @SaitejaUtpala
    SaitejaUtpala committed Jun 30, 2021
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Commits on Jul 6, 2021

  1. Merge pull request geomstats#1027 from SaitejaUtpala/update-pytorch-v… 

    …ersion

clean pytorch backend.
    @ninamiolane
    ninamiolane committed Jul 6, 2021
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Commits on Jul 8, 2021

  1. Geodesics between simple shapes

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  2. add test, remove not working code

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  3. Add cell data and analysis of cells

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  4. Fix style

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  5. loop with enumerate

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  6. Add projection to closed curves

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  7. delete empty notebook

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  8. Fix style

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  9. Clean code and add unit tests

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  10. Merge branch 'discrete_curves' of https://github.com/Florent-Michel/g… 

    …eomstats into discrete_curves
    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  11. Resolve conflicts

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  12. Resolve forgotten conflicts

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  13. Add abstract methods

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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  14. Fix attempt

    @Florent-Michel
    Florent-Michel committed Jul 8, 2021
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