This sections describes updating git submodules to use your own forks. You can update submodule so that they use your forks at any time. It is recommended you only update the submodules that you need to, and that you leave submodules that you don't need to modify pointing to the GEOS-Chem repositories.
The rest of this section assumes you are in the top-level of GCHP, i.e.,
$ cd GCHP # navigate to top-level of GCHP
First, identify the submodules that you need to modify. The :file:`.gitmodules` file has the paths and URLs to the submodules. You can see it with the following command
$ cat .gitmodules
[submodule "src/MAPL"]
path = src/MAPL
url = https://github.com/sdeastham/MAPL
[submodule "src/GMAO_Shared"]
path = src/GMAO_Shared
url = https://github.com/geoschem/GMAO_Shared
[submodule "ESMA_cmake"]
path = ESMA_cmake
url = https://github.com/geoschem/ESMA_cmake
[submodule "src/gFTL-shared"]
path = src/gFTL-shared
url = https://github.com/geoschem/gFTL-shared.git
[submodule "src/FMS"]
path = src/FMS
url = https://github.com/geoschem/FMS.git
[submodule "src/GCHP_GridComp/FVdycoreCubed_GridComp"]
path = src/GCHP_GridComp/FVdycoreCubed_GridComp
url = https://github.com/sdeastham/FVdycoreCubed_GridComp.git
[submodule "src/GCHP_GridComp/GEOSChem_GridComp/geos-chem"]
path = src/GCHP_GridComp/GEOSChem_GridComp/geos-chem
url = https://github.com/sdeastham/geos-chem.git
[submodule "src/GCHP_GridComp/HEMCO_GridComp/HEMCO"]
path = src/GCHP_GridComp/HEMCO_GridComp/HEMCO
url = https://github.com/geoschem/HEMCO.git
Once you know which submodules you need to update, fork each of them on GitHub.
Once you have your own forks for the submodules that you are going to modify, update the submodule URLs in :file:`.gitmodules`
$ git config -f .gitmodules -e # opens editor, update URLs for your forks
Synchronize your submodules
$ git submodule sync
Add and commit the update to :file:`.gitmodules`.
$ git add .gitmodules
$ git commit -m "Updated submodules to use my own forks"
Now, when you push to your GCHP fork, you should see the submodules point to your submodule forks.