Bug in aldex.clr when using glm model matrix

[orcuttlab]

Greetings - I am trying to use a glm for a 2 factor experimental design and I am getting the error:

Error in coerce.data(reads, conds) :
mismatch between number of samples and condition vector

I also get this error when I use the example data provided in the vignette:

selex.sub <- selex[1:400,]

covariates <- data.frame("A" = sample(0:1, 14, replace = TRUE),

•                      "B" = c(rep(0, 7), rep(1, 7)))
  

mm <- model.matrix(~ A + B, covariates)
x <- aldex.clr(selex.sub, mm, mc.samples=8, denom="all")
Error in coerce.data(reads, conds) :
mismatch between number of samples and condition vector

I have thoroughly looked over my data and they have the same amount and samples and the same sample names.

Thank you

[kevinVervier]

Same here. I could not run aldex.clr with a model.matrix object.

[ggloor]

This has been fixed in the ALDEx_bioc repository. Download and install the version in the dev branch and it should work.