Error downloading the fungal database.

[abdeljalil-senhaji]

Hello @glarue

I am launching the script to retrieve all the fungal assembly sequences in fasta format, but it is showing me this error:

`python3 jgi-query.py fungi

Retrieving information from JGI for query 'fungi' using command 'curl 'https://genome.jgi.doe.gov/portal/ext-api/downloads/get-directory?
organism=fungi' -L -b cookies > fungi_jgi_index.xml'

% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 92 0 92 0 0 0 0 --:--:-- 0:10:00 --:--:-- 28

Traceback (most recent call last):
File /JGI-db/jgi-query-main/jgi-query.py", line 1151, in
if not any(v["results"] for v in list(file_list.values())):
AttributeError: 'NoneType' object has no attribute 'values'`

Do you have any idea how to download all the fungal genome sequences?

[glarue]

Hi @abdeljalil-senhaji, not sure if you saw my response to your earlier issue on the same topic? #15

[glarue]

Resolved in #15 (comment)