Update GitHub Actions and dependency versions. (#901)

* Update GitHub Actions versions. * Update zarr. * Rerun CI with new Codecov token. * Update coverage. * Update pre-commit hooks for good measure. * Run codecov with token.
glotzerlab · Mar 3, 2023 · 9febbe8 · 9febbe8
1 parent a3036b7
commit 9febbe8
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Showing 5 changed files with 12 additions and 10 deletions.
diff --git a/.github/workflows/publish-packages.yml b/.github/workflows/publish-packages.yml
@@ -41,14 +41,14 @@ jobs:
       run:
         python -m pip install signac --progress-bar off --no-index -f dist/
     - name: Run MongoDB
-      uses: supercharge/mongodb-github-action@1.7.0
+      uses: supercharge/mongodb-github-action@1.9.0
     - name: Run Redis
-      uses: supercharge/redis-github-action@1.4.0
+      uses: supercharge/redis-github-action@1.5.0
     - name: Test with pytest
       run:
         python -m pytest -v tests/
     - name: Upload artifact
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v3
       with:
           name: release
           path: dist/
@@ -58,7 +58,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download artifact
-        uses: actions/download-artifact@v2
+        uses: actions/download-artifact@v3
         with:
             name: release
             path: dist/

diff --git a/.github/workflows/run-pytest.yml b/.github/workflows/run-pytest.yml
@@ -53,12 +53,14 @@ jobs:
       run: |
         pip install -e .
     - name: Run MongoDB
-      uses: supercharge/mongodb-github-action@1.7.0
+      uses: supercharge/mongodb-github-action@1.9.0
       if: ${{ matrix.os == 'ubuntu-latest' && matrix.config.dependencies != 'minimal' }}
     - name: Run Redis
-      uses: supercharge/redis-github-action@1.4.0
+      uses: supercharge/redis-github-action@1.5.0
       if: ${{ matrix.os == 'ubuntu-latest' && matrix.config.dependencies != 'minimal' }}
     - name: Test with pytest
       run: |
         pytest --cov=signac --cov-config=pyproject.toml --cov-report=xml tests/ -v
-    - uses: codecov/codecov-action@v2
+    - uses: codecov/codecov-action@v3
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -46,7 +46,7 @@ repos:
         additional_dependencies:
           - tomli
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v0.991'
+    rev: 'v1.0.1'
     hooks:
       - id: mypy
         additional_dependencies:

diff --git a/requirements/requirements-test-optional.txt b/requirements/requirements-test-optional.txt
@@ -5,4 +5,4 @@ pymongo==4.3.3; implementation_name=='cpython'
 redis==4.5.1
 ruamel.yaml==0.17.21
 tables==3.8.0; implementation_name=='cpython'
-zarr==2.13.6; platform_system!='Windows'
+zarr==2.14.2; platform_system!='Windows'
diff --git a/requirements/requirements-test.txt b/requirements/requirements-test.txt
@@ -1,4 +1,4 @@
-coverage==7.1.0
+coverage==7.2.1
 pytest==7.2.1
 pytest-cov==4.0.0
 pytest-xdist==3.2.0