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Top taxa in each individual sample #8
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Hi pauGaus, There is no such option in Fantaxtic, but I've written you some code to do so - see below. I might implement this into the package at some point, but for now, just copy and run the functions below. Hope that this solves your issue!
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Let me know if this was useful. |
Thank you so much for sending this code. I actually found some other code that worked before you sent this, so I decided not to risk confusing myself by trying yours! Thank you. |
I'm glad to hear that you found a solution to your problem. Would you mind trying out the code above to see if it does what you want? I'd like to implement it into the package, but before I do so, any feedback would be appreciated. |
This issue has now been resolved. To get the top taxa per sample, run:
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Hi, I need to see what are the top taxa in each individual sample. Is there a way to do that using fantaxtic? I can only see the top taxa across all samples in the entire phyloseq object.
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